Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 C 1.53003 * 109.46792 * 120.00059 * 2 1 3 5 5 H 1.09005 * 110.85771 * 297.70846 * 4 2 1 6 6 C 1.54845 * 110.94623 * 173.96358 * 4 2 1 7 7 O 1.44419 * 101.13119 * 218.41309 * 6 4 2 8 8 C 1.34594 * 107.58139 * 24.96140 * 7 6 4 9 9 C 1.50706 * 122.94024 * 162.69746 * 8 7 6 10 10 C 1.50696 * 109.47259 * 179.71032 * 9 8 7 11 11 H 1.08002 * 120.00318 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99922 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99824 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99920 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46742 * 90.00640 * 14 12 10 16 16 H 1.48496 * 109.46943 * 209.99935 * 14 12 10 17 17 H 1.48493 * 109.47567 * 330.00545 * 14 12 10 18 18 N 1.28637 * 114.12671 * 342.42894 * 8 7 6 19 19 H 1.08996 * 109.47784 * 300.00142 * 1 2 3 20 20 H 1.09000 * 109.47037 * 60.00366 * 1 2 3 21 21 H 1.09007 * 109.47363 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47169 * 239.99440 * 2 1 3 23 23 H 1.08994 * 109.47103 * 59.99837 * 3 2 1 24 24 H 1.08997 * 109.46689 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46871 * 299.99736 * 3 2 1 26 26 H 1.09007 * 111.07596 * 336.58608 * 6 4 2 27 27 H 1.09002 * 111.07999 * 100.58205 * 6 4 2 28 28 H 1.09001 * 109.46564 * 299.71292 * 9 8 7 29 29 H 1.08998 * 109.47012 * 59.70346 * 9 8 7 30 30 H 0.97005 * 119.99648 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7228 -0.2022 2.1538 6 6 3.5803 -0.8743 1.2102 7 8 3.7438 -2.1940 1.7735 8 6 2.6024 -2.8732 1.5559 9 6 2.5113 -4.3745 1.6510 10 6 1.0993 -4.8117 1.3579 11 1 0.3432 -4.0760 1.1262 12 6 0.7725 -6.1509 1.3853 13 7 1.6930 -7.0467 1.6679 14 14 -0.9780 -6.6928 1.0226 15 1 -1.1275 -6.9411 -0.4339 16 1 -1.2748 -7.9409 1.7705 17 1 -1.9232 -5.6273 1.4427 18 7 1.5947 -2.1285 1.2649 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.9525 -0.8324 0.1865 27 1 4.0650 -0.1217 1.8321 28 1 3.1894 -4.8262 0.9269 29 1 2.7889 -4.6924 2.6560 30 1 1.4630 -7.9889 1.6876 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019889.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = -52.227393 kcal Electronic energy + Delta-G solvation = -12569.141195 eV Core-core repulsion = 10363.693955 eV Total energy + Delta-G solvation = -2205.447240 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.09348 -36.97363 -35.57553 -33.75788 -31.65957 -29.11653 -27.79058 -25.48173 -24.32609 -21.17765 -21.00312 -18.38992 -17.73348 -17.15837 -16.41320 -16.34385 -15.10469 -14.69495 -14.40722 -14.15832 -14.08587 -13.54685 -13.15062 -12.88738 -12.82420 -12.68967 -12.34894 -12.10375 -11.87145 -11.77992 -11.63900 -11.44628 -10.70799 -10.61773 -9.88595 -8.21101 -6.28109 1.33565 1.43596 1.44877 1.57185 2.36371 2.60405 3.14835 3.30660 3.67039 3.94516 3.97784 4.23297 4.35897 4.46028 4.61906 4.76084 4.82586 4.92714 5.02759 5.09396 5.14532 5.22876 5.25797 5.43861 5.45223 5.58048 5.81774 6.08928 6.84371 7.09650 7.39908 8.92081 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043354 B = 0.009692 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.690622 B = 2888.432433 C = 3458.118111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 C -0.139 4.139 4 C 0.015 3.985 5 H 0.093 0.907 6 C 0.019 3.981 7 O -0.371 6.371 8 C 0.309 3.691 9 C 0.087 3.913 10 C -0.521 4.521 11 H 0.075 0.925 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.969 3.031 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.269 1.269 18 N -0.549 5.549 19 H 0.056 0.944 20 H 0.067 0.933 21 H 0.036 0.964 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 14.758 -2.856 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.095 4.095 5 H 0.111 0.889 6 C -0.057 4.057 7 O -0.276 6.276 8 C 0.084 3.916 9 C 0.050 3.950 10 C -0.559 4.559 11 H 0.093 0.907 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.794 3.206 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.194 1.194 18 N -0.284 5.284 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.152 0.848 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.231 14.567 -2.924 14.860 hybrid contribution 0.087 -0.396 0.099 0.417 sum 0.318 14.171 -2.825 14.454 Atomic orbital electron populations 1.21669 0.94605 1.01258 1.01830 1.20988 0.96817 0.96717 0.94727 1.21820 1.01474 0.93349 1.03044 1.23906 0.92654 0.92096 1.00821 0.88881 1.24895 0.97446 0.82543 1.00834 1.86978 1.38943 1.27135 1.74509 1.26266 0.80892 0.97149 0.87324 1.17867 0.98749 0.80352 0.98042 1.21392 0.94778 0.92651 1.47122 0.90711 1.25867 1.01942 0.96542 0.95012 1.70071 1.35272 1.01825 1.50091 0.85373 0.79284 0.77567 0.78358 1.19822 1.20450 1.19365 1.74899 1.27277 1.01665 1.24606 0.92539 0.91355 0.94452 0.92483 0.91703 0.91634 0.91002 0.89301 0.84788 0.94749 0.94955 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.06 71.98 0.65 -3.10 16 2 C -0.07 -1.97 2.60 -10.79 -0.03 -1.99 16 3 C -0.14 -2.50 9.04 71.98 0.65 -1.85 16 4 C 0.01 0.48 3.25 45.41 0.15 0.63 16 5 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 6 C 0.02 0.55 6.89 72.61 0.50 1.05 16 7 O -0.37 -15.18 11.18 -78.59 -0.88 -16.06 16 8 C 0.31 14.56 7.67 88.58 0.68 15.24 16 9 C 0.09 4.76 5.60 29.10 0.16 4.92 16 10 C -0.52 -30.23 8.95 25.60 0.23 -30.00 16 11 H 0.07 4.37 6.77 -2.91 -0.02 4.35 16 12 C 0.00 0.24 5.46 84.66 0.46 0.70 16 13 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 14 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 18 N -0.55 -24.47 9.28 -429.27 -3.98 -28.45 16 19 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.04 1.28 7.72 -2.38 -0.02 1.26 16 22 H 0.06 1.67 8.11 -2.39 -0.02 1.65 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.02 7.49 -2.39 -0.02 1.00 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 2.37 7.89 -2.38 -0.02 2.35 16 27 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -64.91 254.56 2.01 -62.91 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.10 Total: 4.29 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 3.46 Total: -14.41 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -3.70 Total: -83.99 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.88 Total: -16.06 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.91 2.01 -62.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019889.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.680 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds