Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47380 * 239.99853 * 2 1 3 5 5 C 1.53002 * 109.46903 * 119.99924 * 2 1 3 6 6 H 1.08998 * 110.82692 * 177.87677 * 5 2 1 7 7 C 1.54786 * 110.90280 * 301.51543 * 5 2 1 8 8 O 1.44214 * 101.51265 * 141.87373 * 7 5 2 9 9 C 1.35203 * 107.69712 * 334.82756 * 8 7 5 10 10 C 1.41253 * 123.22353 * 197.56730 * 9 8 7 11 11 H 1.07997 * 120.00026 * 174.95508 * 10 9 8 12 12 C 1.40220 * 120.00212 * 354.95744 * 10 9 8 13 13 N 1.30605 * 119.99538 * 5.07839 * 12 10 9 14 14 Si 1.86797 * 120.00264 * 185.07820 * 12 10 9 15 15 H 1.48504 * 109.46971 * 95.00063 * 14 12 10 16 16 H 1.48495 * 109.47379 * 214.99931 * 14 12 10 17 17 H 1.48501 * 109.47279 * 335.00130 * 14 12 10 18 18 N 1.30637 * 113.54884 * 17.59363 * 9 8 7 19 19 H 1.08994 * 109.47416 * 305.33655 * 1 2 3 20 20 H 1.09003 * 109.46878 * 65.33383 * 1 2 3 21 21 H 1.09003 * 109.47016 * 185.33301 * 1 2 3 22 22 H 1.09002 * 109.47255 * 179.97438 * 3 2 1 23 23 H 1.09007 * 109.47302 * 299.99674 * 3 2 1 24 24 H 1.09000 * 109.47713 * 60.00013 * 3 2 1 25 25 H 1.09010 * 109.46633 * 300.00167 * 4 2 1 26 26 H 1.08999 * 109.47054 * 59.99667 * 4 2 1 27 27 H 1.08996 * 109.47006 * 180.02562 * 4 2 1 28 28 H 1.08997 * 111.02242 * 23.81022 * 7 5 2 29 29 H 1.09009 * 111.04855 * 259.94240 * 7 5 2 30 30 H 0.96999 * 119.99690 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 3.1290 -0.7670 1.2530 7 6 1.5114 -0.0400 2.5347 8 8 1.2535 -1.1800 3.3794 9 6 1.0326 -2.2450 2.5763 10 6 0.4048 -3.4307 3.0184 11 1 0.1808 -4.2180 2.3140 12 6 0.0725 -3.5854 4.3718 13 7 0.2520 -2.5962 5.2055 14 14 -0.6270 -5.2062 4.9825 15 1 0.4714 -6.0475 5.5219 16 1 -1.6215 -4.9440 6.0537 17 1 -1.2871 -5.9158 3.8572 18 7 1.4558 -2.0725 1.3525 19 1 -0.3634 0.5943 0.8383 20 1 -0.3633 0.4289 -0.9339 21 1 -0.3633 -1.0232 0.0955 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7490 -1.2491 26 1 1.6768 -0.2075 -2.1392 27 1 3.1301 -0.7216 -1.2489 28 1 0.5943 0.5140 2.3348 29 1 2.2694 0.6086 2.9741 30 1 0.0218 -2.7031 6.1417 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -36.807495 kcal Electronic energy + Delta-G solvation = -13001.675494 eV Core-core repulsion = 10796.896911 eV Total energy + Delta-G solvation = -2204.778583 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.47932 -36.09450 -33.36127 -30.96257 -28.68216 -26.89057 -26.67074 -25.31842 -22.15362 -19.78646 -17.95873 -17.00990 -15.35701 -15.06821 -14.46071 -13.82566 -13.45311 -13.24068 -13.01194 -12.11844 -11.89284 -11.77282 -11.37119 -11.14347 -11.02837 -10.98170 -10.73136 -10.41854 -10.28969 -10.08933 -9.97951 -9.56689 -9.11787 -8.07052 -7.44600 -6.71007 -4.68699 3.00036 3.11086 3.16817 3.96182 3.96471 5.05451 5.25539 5.45734 5.51004 5.62192 5.89609 6.03959 6.06762 6.11272 6.23996 6.27188 6.31544 6.40122 6.54578 6.62217 6.74639 6.91696 6.94500 7.08450 7.19153 7.26658 7.87008 8.33948 8.67876 8.93357 10.01047 10.31016 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065956 B = 0.009955 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.424658 B = 2811.916116 C = 3007.761075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C -0.141 4.141 4 C -0.124 4.124 5 C 0.056 3.944 6 H 0.049 0.951 7 C 0.012 3.988 8 O -0.316 6.316 9 C 0.412 3.588 10 C -0.452 4.452 11 H 0.101 0.899 12 C 0.079 3.921 13 N -0.777 5.777 14 Si 0.921 3.079 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.259 1.259 18 N -0.684 5.684 19 H 0.044 0.956 20 H 0.039 0.961 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 3.969 -3.944 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.182 4.182 5 C -0.056 4.056 6 H 0.067 0.933 7 C -0.066 4.066 8 O -0.221 6.221 9 C 0.214 3.786 10 C -0.490 4.490 11 H 0.119 0.881 12 C -0.144 4.144 13 N -0.404 5.404 14 Si 0.745 3.255 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.183 1.183 18 N -0.436 5.436 19 H 0.063 0.937 20 H 0.058 0.942 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.353 3.744 -4.277 5.695 hybrid contribution -0.127 0.140 0.946 0.964 sum 0.226 3.884 -3.331 5.122 Atomic orbital electron populations 1.21818 0.95000 1.02867 0.99435 1.20382 0.95611 0.93417 0.95823 1.21917 1.00512 0.96577 1.00905 1.21657 0.99709 1.01416 0.95386 1.22993 0.97646 0.92774 0.92196 0.93304 1.24378 0.99296 0.90640 0.92305 1.87340 1.85007 1.16483 1.33241 1.21921 0.85714 0.87152 0.83845 1.18818 1.36354 1.00183 0.93660 0.88136 1.26066 0.93300 0.98221 0.96783 1.69767 1.34879 1.31064 1.04708 0.86091 0.79095 0.81277 0.79011 1.19395 1.20216 1.18298 1.75527 1.35746 1.14199 1.18086 0.93678 0.94205 0.91103 0.93198 0.93272 0.93107 0.91352 0.94352 0.93898 0.92262 0.91061 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.99 37.16 0.30 -2.23 16 2 C -0.05 -0.96 0.64 -154.51 -0.10 -1.06 16 3 C -0.14 -2.17 8.27 37.15 0.31 -1.86 16 4 C -0.12 -2.18 8.38 37.16 0.31 -1.87 16 5 C 0.06 1.26 2.99 -66.40 -0.20 1.06 16 6 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 7 C 0.01 0.28 6.48 38.10 0.25 0.52 16 8 O -0.32 -8.83 9.21 -17.30 -0.16 -8.99 16 9 C 0.41 11.69 7.37 -16.92 -0.12 11.57 16 10 C -0.45 -12.62 9.47 -37.69 -0.36 -12.97 16 11 H 0.10 2.72 7.85 -52.49 -0.41 2.31 16 12 C 0.08 2.04 5.49 -17.33 -0.10 1.95 16 13 N -0.78 -20.98 11.83 55.56 0.66 -20.32 16 14 Si 0.92 19.06 29.56 -169.99 -5.03 14.04 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 18 N -0.68 -18.18 10.06 -53.14 -0.53 -18.71 16 19 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.07 1.54 7.35 -51.93 -0.38 1.15 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 24 H 0.05 0.76 7.25 -51.93 -0.38 0.39 16 25 H 0.07 1.34 7.85 -51.92 -0.41 0.94 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.29 5.78 -51.93 -0.30 0.99 16 29 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 30 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 LS Contribution 246.75 15.07 3.72 3.72 Total: -1.00 -29.23 246.75 -5.35 -34.59 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.30 Total: 0.59 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 0.29 Total: -4.90 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.12 Total: -39.04 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.16 Total: -8.99 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.23 -5.35 -34.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.221 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds