Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47380 * 239.99853 * 2 1 3 5 5 C 1.53002 * 109.46903 * 119.99924 * 2 1 3 6 6 H 1.08998 * 110.82692 * 177.87677 * 5 2 1 7 7 C 1.54786 * 110.90280 * 301.51543 * 5 2 1 8 8 O 1.44214 * 101.51265 * 141.87373 * 7 5 2 9 9 C 1.35203 * 107.69712 * 334.82756 * 8 7 5 10 10 C 1.41253 * 123.22353 * 197.56730 * 9 8 7 11 11 H 1.07997 * 120.00026 * 174.95508 * 10 9 8 12 12 C 1.40220 * 120.00212 * 354.95744 * 10 9 8 13 13 N 1.30605 * 119.99538 * 5.07839 * 12 10 9 14 14 Si 1.86797 * 120.00264 * 185.07820 * 12 10 9 15 15 H 1.48504 * 109.46971 * 95.00063 * 14 12 10 16 16 H 1.48495 * 109.47379 * 214.99931 * 14 12 10 17 17 H 1.48501 * 109.47279 * 335.00130 * 14 12 10 18 18 N 1.30637 * 113.54884 * 17.59363 * 9 8 7 19 19 H 1.08994 * 109.47416 * 305.33655 * 1 2 3 20 20 H 1.09003 * 109.46878 * 65.33383 * 1 2 3 21 21 H 1.09003 * 109.47016 * 185.33301 * 1 2 3 22 22 H 1.09002 * 109.47255 * 179.97438 * 3 2 1 23 23 H 1.09007 * 109.47302 * 299.99674 * 3 2 1 24 24 H 1.09000 * 109.47713 * 60.00013 * 3 2 1 25 25 H 1.09010 * 109.46633 * 300.00167 * 4 2 1 26 26 H 1.08999 * 109.47054 * 59.99667 * 4 2 1 27 27 H 1.08996 * 109.47006 * 180.02562 * 4 2 1 28 28 H 1.08997 * 111.02242 * 23.81022 * 7 5 2 29 29 H 1.09009 * 111.04855 * 259.94240 * 7 5 2 30 30 H 0.96999 * 119.99690 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 3.1290 -0.7670 1.2530 7 6 1.5114 -0.0400 2.5347 8 8 1.2535 -1.1800 3.3794 9 6 1.0326 -2.2450 2.5763 10 6 0.4048 -3.4307 3.0184 11 1 0.1808 -4.2180 2.3140 12 6 0.0725 -3.5854 4.3718 13 7 0.2520 -2.5962 5.2055 14 14 -0.6270 -5.2062 4.9825 15 1 0.4714 -6.0475 5.5219 16 1 -1.6215 -4.9440 6.0537 17 1 -1.2871 -5.9158 3.8572 18 7 1.4558 -2.0725 1.3525 19 1 -0.3634 0.5943 0.8383 20 1 -0.3633 0.4289 -0.9339 21 1 -0.3633 -1.0232 0.0955 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7490 -1.2491 26 1 1.6768 -0.2075 -2.1392 27 1 3.1301 -0.7216 -1.2489 28 1 0.5943 0.5140 2.3348 29 1 2.2694 0.6086 2.9741 30 1 0.0218 -2.7031 6.1417 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -58.138059 kcal Electronic energy + Delta-G solvation = -13002.600456 eV Core-core repulsion = 10796.896911 eV Total energy + Delta-G solvation = -2205.703546 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.39191 -37.71754 -35.35116 -32.95486 -30.56023 -28.37626 -28.12472 -27.15693 -23.91292 -21.76473 -19.70112 -18.92076 -17.16734 -16.99968 -16.18071 -15.63473 -14.99439 -14.85416 -14.65899 -13.87281 -13.42619 -13.23428 -13.02152 -12.79740 -12.68668 -12.63715 -12.45323 -12.21027 -11.90115 -11.61186 -11.58642 -11.21610 -11.02199 -10.07669 -9.45799 -8.66252 -6.77676 1.32886 1.41760 1.58410 2.02471 2.23151 3.12824 3.38816 3.87538 4.01647 4.03306 4.21892 4.42150 4.49690 4.59246 4.76658 4.86066 4.94545 5.01280 5.06589 5.11166 5.19796 5.22337 5.23805 5.32176 5.58392 5.69315 5.87565 6.26385 6.65776 6.85724 7.97437 8.37141 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065956 B = 0.009955 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.424658 B = 2811.916116 C = 3007.761075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.134 4.134 4 C -0.120 4.120 5 C 0.052 3.948 6 H 0.043 0.957 7 C 0.009 3.991 8 O -0.345 6.345 9 C 0.386 3.614 10 C -0.489 4.489 11 H 0.096 0.904 12 C 0.036 3.964 13 N -0.811 5.811 14 Si 1.002 2.998 15 H -0.260 1.260 16 H -0.262 1.262 17 H -0.255 1.255 18 N -0.701 5.701 19 H 0.041 0.959 20 H 0.070 0.930 21 H 0.032 0.968 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 4.478 -4.303 6.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.177 4.177 5 C -0.059 4.059 6 H 0.061 0.939 7 C -0.068 4.068 8 O -0.250 6.250 9 C 0.188 3.812 10 C -0.527 4.527 11 H 0.114 0.886 12 C -0.183 4.183 13 N -0.438 5.438 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.186 1.186 17 H -0.179 1.179 18 N -0.452 5.452 19 H 0.060 0.940 20 H 0.089 0.911 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.186 4.284 -4.655 6.329 hybrid contribution -0.025 0.057 1.005 1.007 sum 0.162 4.341 -3.650 5.674 Atomic orbital electron populations 1.21756 0.95280 1.00627 1.00919 1.20434 0.95378 0.95346 0.94128 1.21849 1.01131 0.93898 1.02326 1.21606 1.00094 0.99861 0.96143 1.23140 0.97178 0.91400 0.94186 0.93877 1.24594 1.00421 0.89701 0.92127 1.87272 1.85265 1.17648 1.34841 1.22266 0.86734 0.87788 0.84461 1.19143 1.37968 1.00451 0.95090 0.88643 1.27052 0.92930 1.02311 0.96014 1.69824 1.35143 1.33323 1.05491 0.84901 0.78590 0.75814 0.78572 1.18483 1.18620 1.17890 1.75458 1.35441 1.16798 1.17526 0.94035 0.91093 0.94859 0.92244 0.90680 0.92911 0.94366 0.91317 0.93256 0.91479 0.88692 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.99 71.98 0.58 -4.13 16 2 C -0.05 -1.86 0.64 -52.18 -0.03 -1.90 16 3 C -0.13 -3.68 8.27 71.98 0.60 -3.09 16 4 C -0.12 -4.00 8.38 71.98 0.60 -3.40 16 5 C 0.05 2.36 2.99 45.40 0.14 2.49 16 6 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 7 C 0.01 0.41 6.48 72.59 0.47 0.88 16 8 O -0.34 -19.72 9.21 -84.83 -0.78 -20.50 16 9 C 0.39 22.62 7.37 85.61 0.63 23.25 16 10 C -0.49 -28.09 9.47 23.49 0.22 -27.86 16 11 H 0.10 5.36 7.85 -2.91 -0.02 5.34 16 12 C 0.04 1.89 5.49 85.36 0.47 2.36 16 13 N -0.81 -44.20 11.83 21.87 0.26 -43.94 16 14 Si 1.00 38.90 29.56 68.60 2.03 40.93 16 15 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 16 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 18 N -0.70 -38.25 10.06 -435.96 -4.38 -42.63 16 19 H 0.04 1.51 6.31 -2.39 -0.02 1.49 16 20 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 21 H 0.03 1.44 7.35 -2.39 -0.02 1.43 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.05 1.42 7.25 -2.39 -0.02 1.41 16 25 H 0.04 1.48 7.85 -2.38 -0.02 1.47 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 2.91 5.78 -2.39 -0.01 2.89 16 29 H 0.09 3.77 8.14 -2.38 -0.02 3.75 16 30 H 0.29 14.08 8.29 -92.71 -0.77 13.31 16 Total: -1.00 -64.42 246.75 1.90 -62.52 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.11 Total: 15.01 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.67 Total: -11.39 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -4.13 Total: -86.57 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.78 Total: -20.50 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -64.42 1.90 -62.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.386 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds