Wall clock time and date at job start Mon Mar 30 2020 01:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46630 * 2 1 4 4 C 1.53001 * 109.47443 * 239.99962 * 2 1 3 5 5 C 1.52996 * 109.47237 * 119.99488 * 2 1 3 6 6 H 1.08998 * 110.80719 * 183.62100 * 5 2 1 7 7 C 1.54790 * 110.90127 * 60.00252 * 5 2 1 8 8 O 1.44213 * 101.54294 * 218.07451 * 7 5 2 9 9 C 1.35294 * 107.65059 * 25.18105 * 8 7 5 10 10 C 1.41254 * 123.21502 * 162.38532 * 9 8 7 11 11 H 1.07994 * 120.00204 * 180.02562 * 10 9 8 12 12 C 1.40221 * 119.99975 * 0.02562 * 10 9 8 13 13 N 1.30608 * 119.99863 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46803 * 60.00192 * 14 12 10 16 16 H 1.48503 * 109.47231 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46922 * 300.00396 * 14 12 10 18 18 N 1.30632 * 113.55782 * 342.39685 * 9 8 7 19 19 H 1.08991 * 109.47234 * 300.00436 * 1 2 3 20 20 H 1.09008 * 109.46801 * 60.00287 * 1 2 3 21 21 H 1.08994 * 109.46738 * 179.97438 * 1 2 3 22 22 H 1.09010 * 109.47073 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47345 * 299.99414 * 3 2 1 24 24 H 1.08991 * 109.47668 * 59.99830 * 3 2 1 25 25 H 1.08996 * 109.46513 * 299.99823 * 4 2 1 26 26 H 1.09001 * 109.46762 * 59.99738 * 4 2 1 27 27 H 1.08998 * 109.47182 * 180.02562 * 4 2 1 28 28 H 1.09002 * 111.01918 * 336.15308 * 7 5 2 29 29 H 1.09000 * 111.01868 * 99.99910 * 7 5 2 30 30 H 0.97003 * 119.99537 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 1 3.1278 -0.6784 1.3040 7 6 1.5425 -2.1865 1.2828 8 8 1.2717 -2.3672 2.6877 9 6 1.0179 -1.1481 3.2167 10 6 0.3702 -0.9630 4.4583 11 1 0.1933 0.0348 4.8316 12 6 -0.0430 -2.0748 5.2061 13 7 0.1714 -3.2816 4.7549 14 14 -0.9002 -1.8300 6.8477 15 1 -2.1480 -1.0514 6.6432 16 1 -1.2323 -3.1530 7.4349 17 1 -0.0012 -1.0911 7.7702 18 7 1.4289 -0.1588 2.4692 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3632 -1.0276 -0.0005 22 1 3.1300 1.4427 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6768 -1.7489 -1.2491 26 1 1.6767 -0.2074 -2.1392 27 1 3.1301 -0.7216 -1.2489 28 1 0.6347 -2.3048 0.6913 29 1 2.3198 -2.8711 0.9433 30 1 -0.1142 -4.0507 5.2725 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:16 Heat of formation + Delta-G solvation = -37.006336 kcal Electronic energy + Delta-G solvation = -13005.829902 eV Core-core repulsion = 10801.042697 eV Total energy + Delta-G solvation = -2204.787205 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46671 -36.08938 -33.35999 -30.95818 -28.67780 -26.89721 -26.66037 -25.31573 -22.15051 -19.78211 -17.95404 -17.01306 -15.36247 -15.06244 -14.45834 -13.82578 -13.44164 -13.23251 -13.00798 -12.11412 -11.89138 -11.76408 -11.35225 -11.12993 -11.04225 -10.99184 -10.76674 -10.35965 -10.31641 -10.08186 -9.99440 -9.57306 -9.11413 -8.06428 -7.44842 -6.70577 -4.68798 3.02872 3.10192 3.14019 3.95264 3.97558 5.07554 5.25182 5.46472 5.50397 5.61866 5.90367 6.04364 6.06807 6.11919 6.23892 6.27059 6.31483 6.40129 6.54561 6.63112 6.74309 6.91640 6.95245 7.08830 7.18992 7.26767 7.87111 8.33238 8.67654 8.93600 10.01519 10.31199 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065034 B = 0.010003 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.440564 B = 2798.458831 C = 2989.342811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.125 4.125 4 C -0.141 4.141 5 C 0.056 3.944 6 H 0.049 0.951 7 C 0.012 3.988 8 O -0.316 6.316 9 C 0.411 3.589 10 C -0.451 4.451 11 H 0.100 0.900 12 C 0.079 3.921 13 N -0.778 5.778 14 Si 0.922 3.078 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.263 1.263 18 N -0.685 5.685 19 H 0.069 0.931 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 1.468 -5.418 5.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.199 4.199 5 C -0.056 4.056 6 H 0.067 0.933 7 C -0.066 4.066 8 O -0.220 6.220 9 C 0.213 3.787 10 C -0.489 4.489 11 H 0.118 0.882 12 C -0.144 4.144 13 N -0.404 5.404 14 Si 0.746 3.254 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.188 1.188 18 N -0.436 5.436 19 H 0.088 0.912 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.275 1.864 -5.387 5.707 hybrid contribution -0.191 -0.886 0.314 0.959 sum 0.084 0.978 -5.074 5.168 Atomic orbital electron populations 1.21796 0.94952 1.00993 1.01219 1.20382 0.95655 0.95534 0.93649 1.21662 0.99698 0.95741 1.01099 1.21918 1.00507 1.00102 0.97398 1.22987 0.97650 0.90700 0.94253 0.93336 1.24369 0.99233 0.98331 0.84712 1.87371 1.84260 1.31686 1.18707 1.21926 0.85748 0.78307 0.92695 1.18780 1.34887 0.94612 1.00648 0.88206 1.26068 0.94037 0.94527 0.99758 1.69757 1.34870 0.98896 1.36921 0.86155 0.80206 0.78304 0.80754 1.18766 1.20368 1.18760 1.75523 1.35590 1.25532 1.06975 0.91214 0.94305 0.93589 0.93899 0.94319 0.91408 0.93085 0.93271 0.93196 0.92296 0.91049 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.02 37.16 0.30 -2.21 16 2 C -0.05 -0.96 0.64 -154.51 -0.10 -1.06 16 3 C -0.12 -2.18 8.39 37.16 0.31 -1.87 16 4 C -0.14 -2.18 8.25 37.16 0.31 -1.87 16 5 C 0.06 1.26 2.99 -66.40 -0.20 1.06 16 6 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 7 C 0.01 0.27 6.45 38.10 0.25 0.52 16 8 O -0.32 -8.83 9.20 -17.57 -0.16 -8.99 16 9 C 0.41 11.69 7.38 -16.92 -0.12 11.56 16 10 C -0.45 -12.60 9.47 -37.69 -0.36 -12.95 16 11 H 0.10 2.70 7.85 -52.49 -0.41 2.28 16 12 C 0.08 2.04 5.50 -17.33 -0.10 1.94 16 13 N -0.78 -20.98 11.81 55.56 0.66 -20.33 16 14 Si 0.92 19.05 29.56 -169.99 -5.02 14.02 16 15 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 16 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 N -0.68 -18.21 10.17 -53.11 -0.54 -18.75 16 19 H 0.07 1.50 7.50 -51.93 -0.39 1.11 16 20 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 21 H 0.05 0.88 6.17 -51.93 -0.32 0.56 16 22 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.33 7.90 -51.93 -0.41 0.92 16 25 H 0.05 0.77 7.15 -51.93 -0.37 0.40 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.29 5.71 -51.93 -0.30 0.99 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 LS Contribution 246.71 15.07 3.72 3.72 Total: -1.00 -29.22 246.71 -5.36 -34.58 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.29 Total: 0.63 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 0.29 Total: -4.88 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.12 Total: -39.08 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.16 Total: -8.99 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.22 -5.36 -34.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.427 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds