Wall clock time and date at job start Mon Mar 30 2020 01:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46630 * 2 1 4 4 C 1.53001 * 109.47443 * 239.99962 * 2 1 3 5 5 C 1.52996 * 109.47237 * 119.99488 * 2 1 3 6 6 H 1.08998 * 110.80719 * 183.62100 * 5 2 1 7 7 C 1.54790 * 110.90127 * 60.00252 * 5 2 1 8 8 O 1.44213 * 101.54294 * 218.07451 * 7 5 2 9 9 C 1.35294 * 107.65059 * 25.18105 * 8 7 5 10 10 C 1.41254 * 123.21502 * 162.38532 * 9 8 7 11 11 H 1.07994 * 120.00204 * 180.02562 * 10 9 8 12 12 C 1.40221 * 119.99975 * 0.02562 * 10 9 8 13 13 N 1.30608 * 119.99863 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46803 * 60.00192 * 14 12 10 16 16 H 1.48503 * 109.47231 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46922 * 300.00396 * 14 12 10 18 18 N 1.30632 * 113.55782 * 342.39685 * 9 8 7 19 19 H 1.08991 * 109.47234 * 300.00436 * 1 2 3 20 20 H 1.09008 * 109.46801 * 60.00287 * 1 2 3 21 21 H 1.08994 * 109.46738 * 179.97438 * 1 2 3 22 22 H 1.09010 * 109.47073 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47345 * 299.99414 * 3 2 1 24 24 H 1.08991 * 109.47668 * 59.99830 * 3 2 1 25 25 H 1.08996 * 109.46513 * 299.99823 * 4 2 1 26 26 H 1.09001 * 109.46762 * 59.99738 * 4 2 1 27 27 H 1.08998 * 109.47182 * 180.02562 * 4 2 1 28 28 H 1.09002 * 111.01918 * 336.15308 * 7 5 2 29 29 H 1.09000 * 111.01868 * 99.99910 * 7 5 2 30 30 H 0.97003 * 119.99537 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 1 3.1278 -0.6784 1.3040 7 6 1.5425 -2.1865 1.2828 8 8 1.2717 -2.3672 2.6877 9 6 1.0179 -1.1481 3.2167 10 6 0.3702 -0.9630 4.4583 11 1 0.1933 0.0348 4.8316 12 6 -0.0430 -2.0748 5.2061 13 7 0.1714 -3.2816 4.7549 14 14 -0.9002 -1.8300 6.8477 15 1 -2.1480 -1.0514 6.6432 16 1 -1.2323 -3.1530 7.4349 17 1 -0.0012 -1.0911 7.7702 18 7 1.4289 -0.1588 2.4692 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3632 -1.0276 -0.0005 22 1 3.1300 1.4427 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6768 -1.7489 -1.2491 26 1 1.6767 -0.2074 -2.1392 27 1 3.1301 -0.7216 -1.2489 28 1 0.6347 -2.3048 0.6913 29 1 2.3198 -2.8711 0.9433 30 1 -0.1142 -4.0507 5.2725 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:16 Heat of formation + Delta-G solvation = -58.375176 kcal Electronic energy + Delta-G solvation = -13006.756525 eV Core-core repulsion = 10801.042697 eV Total energy + Delta-G solvation = -2205.713828 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.38059 -37.71488 -35.34965 -32.95279 -30.55673 -28.37995 -28.12390 -27.15350 -23.91168 -21.76104 -19.69780 -18.92561 -17.17494 -16.98926 -16.18113 -15.63106 -14.99211 -14.84781 -14.65637 -13.86795 -13.41184 -13.24418 -13.01463 -12.78277 -12.69712 -12.63906 -12.46157 -12.18334 -11.93310 -11.60542 -11.59533 -11.22571 -11.01212 -10.07306 -9.46214 -8.65773 -6.77859 1.35207 1.41605 1.55934 2.03234 2.23047 3.15801 3.36775 3.87561 4.01455 4.03087 4.22538 4.42222 4.49573 4.59159 4.76349 4.86148 4.94581 5.00755 5.06356 5.11049 5.19496 5.22668 5.23942 5.32330 5.58612 5.68890 5.87620 6.25846 6.65583 6.85822 7.97698 8.37130 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065034 B = 0.010003 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.440564 B = 2798.458831 C = 2989.342811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.120 4.120 4 C -0.135 4.135 5 C 0.053 3.947 6 H 0.043 0.957 7 C 0.009 3.991 8 O -0.344 6.344 9 C 0.385 3.615 10 C -0.488 4.488 11 H 0.096 0.904 12 C 0.036 3.964 13 N -0.811 5.811 14 Si 1.002 2.998 15 H -0.256 1.256 16 H -0.263 1.263 17 H -0.257 1.257 18 N -0.702 5.702 19 H 0.033 0.967 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 1.538 -6.076 6.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.053 4.053 3 C -0.177 4.177 4 C -0.192 4.192 5 C -0.059 4.059 6 H 0.061 0.939 7 C -0.069 4.069 8 O -0.250 6.250 9 C 0.187 3.813 10 C -0.526 4.526 11 H 0.114 0.886 12 C -0.183 4.183 13 N -0.438 5.438 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.187 1.187 17 H -0.181 1.181 18 N -0.453 5.453 19 H 0.053 0.947 20 H 0.090 0.910 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.027 1.937 -6.080 6.381 hybrid contribution -0.054 -0.897 0.430 0.996 sum -0.027 1.040 -5.651 5.746 Atomic orbital electron populations 1.21734 0.95289 1.00357 1.01028 1.20435 0.95374 0.96219 0.93251 1.21608 1.00117 0.94891 1.01104 1.21851 1.01154 0.99959 0.96258 1.23137 0.97170 0.90933 0.94652 0.93889 1.24583 1.00361 0.99178 0.82742 1.87304 1.84512 1.32014 1.21143 1.22278 0.86751 0.78810 0.93479 1.19125 1.36489 0.95397 1.01583 0.88615 1.27056 0.94086 0.93555 1.03628 1.69820 1.35282 0.99917 1.38750 0.84969 0.78884 0.78929 0.75128 1.18034 1.18711 1.18142 1.75454 1.35354 1.26000 1.08496 0.94737 0.91049 0.94422 0.93198 0.91295 0.94384 0.92956 0.90662 0.92198 0.91555 0.88674 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.02 71.98 0.58 -4.09 16 2 C -0.05 -1.86 0.64 -52.18 -0.03 -1.90 16 3 C -0.12 -3.99 8.39 71.98 0.60 -3.39 16 4 C -0.13 -3.70 8.25 71.98 0.59 -3.10 16 5 C 0.05 2.37 2.99 45.39 0.14 2.50 16 6 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 7 C 0.01 0.40 6.45 72.59 0.47 0.87 16 8 O -0.34 -19.71 9.20 -85.80 -0.79 -20.50 16 9 C 0.39 22.59 7.38 85.61 0.63 23.22 16 10 C -0.49 -28.04 9.47 23.49 0.22 -27.82 16 11 H 0.10 5.36 7.85 -2.91 -0.02 5.33 16 12 C 0.04 1.88 5.50 85.36 0.47 2.35 16 13 N -0.81 -44.19 11.81 21.87 0.26 -43.93 16 14 Si 1.00 38.82 29.56 68.60 2.03 40.85 16 15 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 16 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 18 N -0.70 -38.32 10.17 -435.83 -4.43 -42.75 16 19 H 0.03 1.49 7.50 -2.39 -0.02 1.47 16 20 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 21 H 0.04 1.41 6.17 -2.39 -0.01 1.40 16 22 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.47 7.90 -2.39 -0.02 1.45 16 25 H 0.05 1.42 7.15 -2.39 -0.02 1.40 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 2.89 5.71 -2.39 -0.01 2.87 16 29 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.29 14.13 8.29 -92.71 -0.77 13.37 16 Total: -1.00 -64.39 246.71 1.85 -62.54 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.11 Total: 15.14 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.67 Total: -11.36 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -4.17 Total: -86.68 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.79 Total: -20.50 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -64.39 1.85 -62.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.168 kcal (2) G-P(sol) polarization free energy of solvation -64.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds