Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46838 * 110.99939 * 2 1 4 4 C 1.53571 * 107.90218 * 121.89974 * 3 2 1 5 5 H 1.08999 * 110.29657 * 257.07581 * 4 3 2 6 6 C 1.50698 * 110.30030 * 135.03947 * 4 3 2 7 7 H 1.08005 * 119.99819 * 242.75989 * 6 4 3 8 8 C 1.37875 * 120.00046 * 62.75330 * 6 4 3 9 9 N 1.31511 * 120.00192 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00310 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00304 * 10 8 6 14 14 C 1.53585 * 105.29048 * 16.05491 * 4 3 2 15 15 H 1.09002 * 112.81941 * 212.92605 * 14 4 3 16 16 C 1.54693 * 109.94817 * 84.97970 * 14 4 3 17 17 O 1.44468 * 103.27864 * 211.26278 * 16 14 4 18 18 C 1.43674 * 107.05969 * 40.33142 * 17 16 14 19 19 C 1.47310 * 111.00330 * 122.52225 * 2 1 3 20 20 H 1.09000 * 112.46671 * 347.26025 * 19 2 1 21 21 H 1.09000 * 109.47460 * 60.12360 * 1 2 3 22 22 H 1.08997 * 109.47238 * 180.12853 * 1 2 3 23 23 H 1.09006 * 109.46688 * 300.12483 * 1 2 3 24 24 H 1.09000 * 109.77776 * 2.28874 * 3 2 1 25 25 H 1.09005 * 109.77630 * 241.50738 * 3 2 1 26 26 H 0.97001 * 119.99934 * 359.97438 * 9 8 6 27 27 H 1.08996 * 110.58603 * 92.83602 * 16 14 4 28 28 H 1.09011 * 110.85868 * 329.81184 * 16 14 4 29 29 H 1.09007 * 109.84650 * 215.01979 * 18 17 16 30 30 H 1.08991 * 109.93830 * 94.04104 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 2.8853 1.5348 1.2407 5 1 2.3580 2.0948 2.0130 6 6 4.1693 2.2335 0.8743 7 1 5.1142 1.7239 0.9927 8 6 4.1378 3.5232 0.3878 9 7 2.9874 4.1439 0.2440 10 14 5.7294 4.3889 -0.0670 11 1 5.4256 5.7563 -0.5605 12 1 6.4240 3.6210 -1.1314 13 1 6.6039 4.4782 1.1299 14 6 3.1752 0.1058 1.7229 15 1 3.2737 0.0370 2.8063 16 6 4.3841 -0.4761 0.9528 17 8 4.0926 -1.8899 0.8969 18 6 2.6853 -2.0203 0.6387 19 6 1.9970 -0.7394 1.1596 20 1 1.2291 -0.9505 1.9038 21 1 -0.3634 0.5119 -0.8911 22 1 -0.3633 -1.0276 0.0023 23 1 -0.3633 0.5158 0.8889 24 1 1.1706 2.0825 0.0410 25 1 2.5842 1.5398 -0.9015 26 1 2.1609 3.6942 0.4798 27 1 5.3097 -0.2954 1.4994 28 1 4.4436 -0.0556 -0.0512 29 1 2.2919 -2.8911 1.1633 30 1 2.5120 -2.1241 -0.4323 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260073784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -42.612363 kcal Electronic energy + Delta-G solvation = -13350.423428 eV Core-core repulsion = 11145.393127 eV Total energy + Delta-G solvation = -2205.030301 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.80458 -36.15174 -33.67239 -31.05242 -29.03880 -27.02062 -25.27807 -23.57049 -22.44895 -19.76992 -19.48246 -16.74752 -16.18711 -15.13844 -14.36744 -14.24030 -13.81572 -13.72159 -13.49416 -12.63563 -12.24380 -11.94198 -11.69523 -11.12006 -10.90476 -10.67548 -10.58798 -10.35495 -10.11167 -9.98552 -9.53938 -9.06759 -8.50158 -8.46020 -7.72378 -6.41435 -4.14628 3.41709 3.42652 3.61049 4.45288 4.56323 4.63572 5.09009 5.29668 5.52389 5.55601 5.63186 5.85285 5.89844 5.99260 6.09669 6.14655 6.22382 6.31347 6.52412 6.60896 6.70072 6.92098 7.02540 7.38542 7.45926 7.69979 7.78240 8.10747 8.33995 8.79240 9.56746 10.96071 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.013629 C = 0.011055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.674239 B = 2054.005290 C = 2532.073905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.055 3.945 4 C 0.026 3.974 5 H 0.020 0.980 6 C -0.593 4.593 7 H 0.057 0.943 8 C 0.021 3.979 9 N -0.910 5.910 10 Si 1.067 2.933 11 H -0.283 1.283 12 H -0.286 1.286 13 H -0.288 1.288 14 C -0.117 4.117 15 H 0.078 0.922 16 C 0.076 3.924 17 O -0.398 6.398 18 C 0.064 3.936 19 C 0.036 3.964 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.021 0.979 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.270 0.730 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 -7.379 0.833 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.072 4.072 4 C 0.007 3.993 5 H 0.038 0.962 6 C -0.632 4.632 7 H 0.075 0.925 8 C -0.184 4.184 9 N -0.546 5.546 10 Si 0.895 3.105 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.214 1.214 14 C -0.136 4.136 15 H 0.097 0.903 16 C 0.000 4.000 17 O -0.318 6.318 18 C -0.014 4.014 19 C -0.073 4.073 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.398 -6.351 -0.198 6.506 hybrid contribution -1.259 -0.782 1.343 2.000 sum -2.656 -7.133 1.145 7.697 Atomic orbital electron populations 1.22476 0.89029 1.00683 1.00249 1.63131 1.06614 1.16651 1.39528 1.23044 0.97325 0.85121 1.01685 1.19569 0.96474 0.90632 0.92649 0.96192 1.21944 0.92029 1.01166 1.48014 0.92456 1.25822 1.03537 0.94911 0.94099 1.70822 0.98493 1.40331 1.44927 0.83564 0.74136 0.76286 0.76544 1.20818 1.21261 1.21433 1.23297 0.94084 0.97378 0.98881 0.90341 1.23528 0.97329 0.78345 1.00784 1.88737 1.23564 1.26128 1.93364 1.23169 0.81773 0.96141 1.00294 1.23763 0.96971 0.95106 0.91492 0.91261 0.91799 0.92377 0.96079 0.94333 0.90496 0.91897 0.89963 0.90476 0.91531 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.05 60.06 0.54 0.94 16 2 N -0.53 -10.52 4.73 -231.69 -1.09 -11.62 16 3 C 0.06 1.27 5.14 -3.56 -0.02 1.26 16 4 C 0.03 0.64 2.34 -91.17 -0.21 0.42 16 5 H 0.02 0.52 8.00 -51.93 -0.42 0.11 16 6 C -0.59 -15.76 7.29 -34.44 -0.25 -16.01 16 7 H 0.06 1.49 6.12 -52.48 -0.32 1.17 16 8 C 0.02 0.57 5.30 -17.82 -0.09 0.48 16 9 N -0.91 -26.44 13.43 55.43 0.74 -25.69 16 10 Si 1.07 24.45 29.90 -169.99 -5.08 19.37 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 14 C -0.12 -2.46 3.97 -88.07 -0.35 -2.81 16 15 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 16 C 0.08 1.58 5.53 38.05 0.21 1.79 16 17 O -0.40 -7.98 11.51 -35.23 -0.41 -8.39 16 18 C 0.06 1.13 7.46 37.92 0.28 1.41 16 19 C 0.04 0.67 3.70 -65.36 -0.24 0.43 16 20 H 0.07 1.18 7.77 -51.93 -0.40 0.77 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.90 6.60 -51.93 -0.34 0.56 16 25 H 0.08 1.97 7.69 -51.93 -0.40 1.57 16 26 H 0.27 7.75 5.64 -40.82 -0.23 7.52 16 27 H 0.08 1.65 7.76 -51.93 -0.40 1.25 16 28 H 0.08 1.77 7.15 -51.92 -0.37 1.39 16 29 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.07 1.16 7.85 -51.93 -0.41 0.76 16 LS Contribution 235.96 15.07 3.56 3.56 Total: -1.00 -28.51 235.96 -6.62 -35.13 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.20 Total: -0.27 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.13 Total: -12.08 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.35 Total: -37.31 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.41 Total: -8.39 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.51 -6.62 -35.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.485 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds