Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46838 * 110.99939 * 2 1 4 4 C 1.53571 * 107.90218 * 121.89974 * 3 2 1 5 5 H 1.08999 * 110.29657 * 257.07581 * 4 3 2 6 6 C 1.50698 * 110.30030 * 135.03947 * 4 3 2 7 7 H 1.08005 * 119.99819 * 242.75989 * 6 4 3 8 8 C 1.37875 * 120.00046 * 62.75330 * 6 4 3 9 9 N 1.31511 * 120.00192 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00310 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00304 * 10 8 6 14 14 C 1.53585 * 105.29048 * 16.05491 * 4 3 2 15 15 H 1.09002 * 112.81941 * 212.92605 * 14 4 3 16 16 C 1.54693 * 109.94817 * 84.97970 * 14 4 3 17 17 O 1.44468 * 103.27864 * 211.26278 * 16 14 4 18 18 C 1.43674 * 107.05969 * 40.33142 * 17 16 14 19 19 C 1.47310 * 111.00330 * 122.52225 * 2 1 3 20 20 H 1.09000 * 112.46671 * 347.26025 * 19 2 1 21 21 H 1.09000 * 109.47460 * 60.12360 * 1 2 3 22 22 H 1.08997 * 109.47238 * 180.12853 * 1 2 3 23 23 H 1.09006 * 109.46688 * 300.12483 * 1 2 3 24 24 H 1.09000 * 109.77776 * 2.28874 * 3 2 1 25 25 H 1.09005 * 109.77630 * 241.50738 * 3 2 1 26 26 H 0.97001 * 119.99934 * 359.97438 * 9 8 6 27 27 H 1.08996 * 110.58603 * 92.83602 * 16 14 4 28 28 H 1.09011 * 110.85868 * 329.81184 * 16 14 4 29 29 H 1.09007 * 109.84650 * 215.01979 * 18 17 16 30 30 H 1.08991 * 109.93830 * 94.04104 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 2.8853 1.5348 1.2407 5 1 2.3580 2.0948 2.0130 6 6 4.1693 2.2335 0.8743 7 1 5.1142 1.7239 0.9927 8 6 4.1378 3.5232 0.3878 9 7 2.9874 4.1439 0.2440 10 14 5.7294 4.3889 -0.0670 11 1 5.4256 5.7563 -0.5605 12 1 6.4240 3.6210 -1.1314 13 1 6.6039 4.4782 1.1299 14 6 3.1752 0.1058 1.7229 15 1 3.2737 0.0370 2.8063 16 6 4.3841 -0.4761 0.9528 17 8 4.0926 -1.8899 0.8969 18 6 2.6853 -2.0203 0.6387 19 6 1.9970 -0.7394 1.1596 20 1 1.2291 -0.9505 1.9038 21 1 -0.3634 0.5119 -0.8911 22 1 -0.3633 -1.0276 0.0023 23 1 -0.3633 0.5158 0.8889 24 1 1.1706 2.0825 0.0410 25 1 2.5842 1.5398 -0.9015 26 1 2.1609 3.6942 0.4798 27 1 5.3097 -0.2954 1.4994 28 1 4.4436 -0.0556 -0.0512 29 1 2.2919 -2.8911 1.1633 30 1 2.5120 -2.1241 -0.4323 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260073784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -62.459067 kcal Electronic energy + Delta-G solvation = -13351.284046 eV Core-core repulsion = 11145.393127 eV Total energy + Delta-G solvation = -2205.890919 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.43664 -37.78394 -35.56769 -32.83829 -30.65647 -28.64697 -27.11049 -25.34213 -24.05996 -21.59258 -21.09049 -18.71303 -17.79347 -16.78249 -16.05285 -15.83980 -15.57868 -15.36911 -15.12636 -14.28343 -13.89302 -13.69662 -13.36880 -12.79324 -12.65721 -12.42455 -12.07015 -12.01009 -11.92399 -11.70612 -11.37664 -10.71915 -10.53696 -10.40725 -9.33175 -8.58814 -6.31961 1.55247 1.61919 1.80304 2.57101 2.98773 3.06878 3.21300 3.54915 3.95731 4.02650 4.22559 4.30491 4.33838 4.42982 4.55247 4.64661 4.77477 4.85894 4.88631 4.96521 4.99875 5.08731 5.18394 5.51231 5.80144 6.04065 6.11411 6.17477 6.24598 6.64169 7.46881 8.79444 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.013629 C = 0.011055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.674239 B = 2054.005290 C = 2532.073905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.075 3.925 4 C 0.020 3.980 5 H -0.006 1.006 6 C -0.599 4.599 7 H 0.059 0.941 8 C -0.029 4.029 9 N -0.938 5.938 10 Si 1.110 2.890 11 H -0.288 1.288 12 H -0.272 1.272 13 H -0.271 1.271 14 C -0.120 4.120 15 H 0.089 0.911 16 C 0.083 3.917 17 O -0.403 6.403 18 C 0.064 3.936 19 C 0.039 3.961 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.021 0.979 24 H 0.025 0.975 25 H 0.043 0.957 26 H 0.259 0.741 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -8.955 1.178 9.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.053 4.053 4 C 0.000 4.000 5 H 0.012 0.988 6 C -0.637 4.637 7 H 0.078 0.922 8 C -0.227 4.227 9 N -0.576 5.576 10 Si 0.932 3.068 11 H -0.214 1.214 12 H -0.197 1.197 13 H -0.196 1.196 14 C -0.139 4.139 15 H 0.107 0.893 16 C 0.008 3.992 17 O -0.323 6.323 18 C -0.013 4.013 19 C -0.069 4.069 20 H 0.114 0.886 21 H 0.084 0.916 22 H 0.109 0.891 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.388 -7.963 0.157 8.085 hybrid contribution -1.314 -0.352 1.249 1.847 sum -2.702 -8.315 1.406 8.855 Atomic orbital electron populations 1.22579 0.86619 1.02865 1.00426 1.63080 1.08874 1.14246 1.40407 1.22581 0.96260 0.87088 0.99409 1.19534 0.95618 0.92339 0.92510 0.98827 1.22292 0.93106 1.01346 1.46929 0.92240 1.27129 1.05471 0.96212 0.93905 1.70924 0.98821 1.40807 1.47018 0.83008 0.71320 0.75149 0.77306 1.21372 1.19702 1.19608 1.23294 0.95533 0.95542 0.99549 0.89316 1.23291 0.97630 0.79035 0.99291 1.88733 1.25186 1.24989 1.93367 1.23340 0.80416 0.96792 1.00800 1.23871 0.96762 0.94786 0.91507 0.88629 0.91604 0.89081 0.96046 0.95625 0.93886 0.93011 0.89462 0.93074 0.87776 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.05 127.69 1.16 1.86 16 2 N -0.54 -20.54 4.73 -886.94 -4.19 -24.73 16 3 C 0.07 3.50 5.14 86.51 0.44 3.94 16 4 C 0.02 0.96 2.34 -11.15 -0.03 0.93 16 5 H -0.01 -0.34 8.00 -2.39 -0.02 -0.36 16 6 C -0.60 -32.19 7.29 25.60 0.19 -32.00 16 7 H 0.06 3.10 6.12 -2.91 -0.02 3.09 16 8 C -0.03 -1.59 5.30 84.65 0.45 -1.14 16 9 N -0.94 -55.88 13.43 21.45 0.29 -55.60 16 10 Si 1.11 49.30 29.90 68.60 2.05 51.35 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 14 C -0.12 -4.90 3.97 -9.14 -0.04 -4.93 16 15 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 16 C 0.08 3.41 5.53 72.56 0.40 3.81 16 17 O -0.40 -15.17 11.51 -148.98 -1.71 -16.88 16 18 C 0.06 2.03 7.46 72.48 0.54 2.57 16 19 C 0.04 1.37 3.70 46.21 0.17 1.54 16 20 H 0.10 2.86 7.77 -2.39 -0.02 2.84 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.03 1.23 6.60 -2.39 -0.02 1.22 16 25 H 0.04 2.28 7.69 -2.38 -0.02 2.26 16 26 H 0.26 15.48 5.64 -92.71 -0.52 14.95 16 27 H 0.09 3.42 7.76 -2.39 -0.02 3.40 16 28 H 0.05 2.35 7.15 -2.38 -0.02 2.33 16 29 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.06 2.07 7.85 -2.39 -0.02 2.05 16 Total: -1.00 -61.27 235.96 1.08 -60.19 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.36 Total: 9.10 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.29 Total: -23.42 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.90 Total: -80.33 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.71 Total: -16.88 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.35 kcal Total: -61.27 1.08 -60.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.267 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds