Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.53000 * 109.47328 * 120.00004 * 2 1 3 5 5 C 1.52993 * 109.47373 * 175.00146 * 4 2 1 6 6 H 1.09000 * 110.80351 * 308.61849 * 5 4 2 7 7 C 1.54792 * 110.90505 * 184.99940 * 5 4 2 8 8 O 1.44210 * 101.50685 * 218.13141 * 7 5 4 9 9 C 1.35196 * 107.70732 * 25.16649 * 8 7 5 10 10 C 1.41252 * 123.22439 * 162.38557 * 9 8 7 11 11 H 1.08001 * 120.00005 * 186.60143 * 10 9 8 12 12 C 1.40219 * 120.00115 * 6.60159 * 10 9 8 13 13 N 1.30594 * 119.99982 * 6.68459 * 12 10 9 14 14 Si 1.86801 * 119.99786 * 186.40689 * 12 10 9 15 15 H 1.48501 * 109.47469 * 265.29533 * 14 12 10 16 16 H 1.48505 * 109.47166 * 25.29820 * 14 12 10 17 17 H 1.48510 * 109.47022 * 145.29462 * 14 12 10 18 18 N 1.30624 * 113.54806 * 342.65791 * 9 8 7 19 19 H 1.08994 * 109.47373 * 300.00289 * 1 2 3 20 20 H 1.09004 * 109.47230 * 60.00537 * 1 2 3 21 21 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47550 * 239.99920 * 2 1 3 23 23 H 1.09002 * 109.47131 * 299.99833 * 3 2 1 24 24 H 1.08994 * 109.47213 * 59.99613 * 3 2 1 25 25 H 1.09006 * 109.47525 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46986 * 54.99468 * 4 2 1 27 27 H 1.09002 * 109.47002 * 295.00570 * 4 2 1 28 28 H 1.08995 * 111.01868 * 100.07622 * 7 5 4 29 29 H 1.09004 * 111.04730 * 336.19859 * 7 5 4 30 30 H 0.97004 * 119.99596 * 179.72798 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.8844 -1.2553 0.2362 7 6 4.1066 -1.6649 2.3742 8 8 5.3160 -0.9501 2.6997 9 6 5.1632 0.3273 2.2839 10 6 5.9707 1.3920 2.7418 11 1 5.7368 2.4076 2.4584 12 6 7.0758 1.1305 3.5642 13 7 7.4366 -0.1022 3.8007 14 14 8.0366 2.5454 4.3154 15 1 9.1984 2.8700 3.4492 16 1 7.1564 3.7360 4.4297 17 1 8.5190 2.1550 5.6647 18 7 4.1938 0.4833 1.4226 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6053 -1.7197 1.2952 27 1 1.7516 -0.1583 2.1370 28 1 4.3275 -2.6865 2.0652 29 1 3.4087 -1.6540 3.2114 30 1 8.2035 -0.2830 4.3665 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074038.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = -59.102272 kcal Electronic energy + Delta-G solvation = -12719.933179 eV Core-core repulsion = 10514.187822 eV Total energy + Delta-G solvation = -2205.745357 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18711 -37.35558 -35.40869 -33.33735 -31.63513 -28.26374 -27.76332 -26.64994 -22.61594 -21.55523 -20.71888 -19.21310 -17.05669 -17.02453 -16.18331 -15.78562 -15.26168 -14.84820 -14.26690 -14.14128 -13.35388 -13.18412 -12.97739 -12.93247 -12.66702 -12.43775 -12.38239 -12.28545 -11.87219 -11.48332 -11.42239 -11.24344 -11.04810 -9.87669 -9.48363 -8.67269 -6.77544 1.33386 1.42300 1.59000 2.02734 2.23413 3.10801 3.41227 3.82773 4.03501 4.17078 4.27550 4.42094 4.44779 4.62849 4.72444 4.82768 4.93879 4.96805 5.09438 5.16960 5.20705 5.30893 5.36851 5.46463 5.61879 5.77061 5.99548 6.29313 6.66006 6.87693 7.97401 8.36963 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058514 B = 0.009261 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.399880 B = 3022.680168 C = 3394.920127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.083 4.083 5 C 0.040 3.960 6 H 0.050 0.950 7 C 0.008 3.992 8 O -0.346 6.346 9 C 0.383 3.617 10 C -0.489 4.489 11 H 0.097 0.903 12 C 0.037 3.963 13 N -0.813 5.813 14 Si 1.002 2.998 15 H -0.259 1.259 16 H -0.256 1.256 17 H -0.263 1.263 18 N -0.693 5.693 19 H 0.048 0.952 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 -0.660 -1.791 6.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.121 4.121 5 C -0.071 4.071 6 H 0.068 0.932 7 C -0.070 4.070 8 O -0.251 6.251 9 C 0.185 3.815 10 C -0.526 4.526 11 H 0.115 0.885 12 C -0.182 4.182 13 N -0.440 5.440 14 Si 0.821 3.179 15 H -0.183 1.183 16 H -0.179 1.179 17 H -0.187 1.187 18 N -0.444 5.444 19 H 0.067 0.933 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.276 -0.415 -2.096 6.629 hybrid contribution 0.625 -0.479 0.631 1.009 sum -5.650 -0.894 -1.465 5.905 Atomic orbital electron populations 1.21794 0.93928 1.02040 1.01737 1.20957 0.96080 0.96356 0.96942 1.21899 1.03593 0.95507 0.99007 1.21479 0.92509 0.99967 0.98157 1.23186 0.96863 0.91285 0.95748 0.93225 1.24540 0.86778 0.97557 0.98126 1.87274 1.36921 1.22404 1.78505 1.22389 0.90104 0.82552 0.86462 1.19159 1.10788 0.92749 1.29935 0.88475 1.27043 0.97184 0.99875 0.94139 1.69809 1.22837 1.22529 1.28801 0.84910 0.77942 0.77167 0.77921 1.18295 1.17930 1.18722 1.75456 1.20177 1.19705 1.29103 0.93282 0.91944 0.91745 0.92056 0.93619 0.95109 0.91120 0.90646 0.94003 0.88102 0.91968 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.19 71.98 0.66 -2.82 16 2 C -0.08 -2.77 2.92 -10.80 -0.03 -2.80 16 3 C -0.14 -5.32 8.58 71.98 0.62 -4.70 16 4 C -0.08 -3.00 4.45 30.59 0.14 -2.87 16 5 C 0.04 1.80 3.59 45.39 0.16 1.96 16 6 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 7 C 0.01 0.34 7.70 72.59 0.56 0.90 16 8 O -0.35 -19.59 9.29 -84.76 -0.79 -20.37 16 9 C 0.38 22.23 7.34 85.61 0.63 22.86 16 10 C -0.49 -27.82 9.46 23.49 0.22 -27.60 16 11 H 0.10 5.39 7.86 -2.91 -0.02 5.37 16 12 C 0.04 1.91 5.49 85.36 0.47 2.38 16 13 N -0.81 -44.20 11.89 21.87 0.26 -43.94 16 14 Si 1.00 38.62 29.56 68.60 2.03 40.65 16 15 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 16 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 17 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 18 N -0.69 -36.99 8.49 -435.98 -3.70 -40.70 16 19 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 3.18 5.50 -2.38 -0.01 3.17 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 29 H 0.06 2.63 7.92 -2.39 -0.02 2.61 16 30 H 0.29 14.06 8.29 -92.71 -0.77 13.30 16 Total: -1.00 -62.97 250.28 2.33 -60.64 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.10 Total: 16.41 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 3.43 Total: -12.68 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -3.44 Total: -84.63 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.79 Total: -20.37 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -62.97 2.33 -60.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074038.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.536 kcal (2) G-P(sol) polarization free energy of solvation -62.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds