Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48536 * 110.99722 * 2 1 4 4 C 1.54322 * 104.60078 * 200.63520 * 3 2 1 5 5 H 1.08996 * 110.28799 * 264.86789 * 4 3 2 6 6 C 1.50703 * 110.28670 * 142.85284 * 4 3 2 7 7 H 1.08002 * 120.00044 * 275.29513 * 6 4 3 8 8 C 1.37878 * 120.00101 * 95.56812 * 6 4 3 9 9 N 1.31512 * 119.99999 * 184.25078 * 8 6 4 10 10 Si 1.86797 * 119.99639 * 4.25854 * 8 6 4 11 11 H 1.48498 * 109.47366 * 84.80760 * 10 8 6 12 12 H 1.48503 * 109.46863 * 204.80169 * 10 8 6 13 13 H 1.48495 * 109.47433 * 324.80235 * 10 8 6 14 14 C 1.54241 * 105.33855 * 23.85999 * 4 3 2 15 15 H 1.09001 * 112.72139 * 123.21308 * 14 4 3 16 16 C 1.55514 * 109.39208 * 250.62899 * 14 4 3 17 17 O 1.42782 * 108.64487 * 125.46519 * 16 14 4 18 18 C 1.42901 * 110.68121 * 1.72375 * 17 16 14 19 19 C 1.48300 * 110.99892 * 244.46784 * 2 1 3 20 20 H 1.08995 * 112.81899 * 36.14245 * 19 2 1 21 21 H 1.09003 * 109.47320 * 59.87877 * 1 2 3 22 22 H 1.08999 * 109.47091 * 179.87287 * 1 2 3 23 23 H 1.09003 * 109.47420 * 299.87497 * 1 2 3 24 24 H 1.09001 * 110.41036 * 81.85808 * 3 2 1 25 25 H 1.08997 * 110.40931 * 319.41603 * 3 2 1 26 26 H 0.97002 * 119.99813 * 180.02562 * 9 8 6 27 27 H 1.09000 * 109.63636 * 5.59727 * 16 14 4 28 28 H 1.08997 * 109.46850 * 245.23363 * 16 14 4 29 29 H 1.08995 * 109.90742 * 222.60922 * 18 17 16 30 30 H 1.09004 * 109.89725 * 101.38311 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4454 1.2491 -0.5263 5 1 4.1456 1.1772 0.3059 6 6 3.7960 2.4235 -1.4032 7 1 3.5276 2.4155 -2.4493 8 6 4.4645 3.5058 -0.8713 9 7 4.6967 4.5654 -1.6148 10 14 5.0405 3.4666 0.9052 11 1 6.3596 2.7891 0.9831 12 1 5.1667 4.8556 1.4153 13 1 4.0533 2.7244 1.7295 14 6 3.4571 -0.0553 -1.3494 15 1 3.7835 0.0988 -2.3779 16 6 4.2778 -1.1369 -0.5911 17 8 3.4639 -2.2993 -0.4322 18 6 2.1886 -2.1105 -1.0486 19 6 2.0004 -0.5967 -1.2493 20 1 1.3945 -0.3575 -2.1231 21 1 -0.3634 0.5157 -0.8889 22 1 -0.3633 -1.0277 -0.0023 23 1 -0.3634 0.5119 0.8911 24 1 2.0023 1.7935 1.0113 25 1 1.4131 2.0196 -0.6646 26 1 5.1674 5.3267 -1.2407 27 1 4.5694 -0.7561 0.3877 28 1 5.1681 -1.3879 -1.1676 29 1 1.4024 -2.4994 -0.4015 30 1 2.1638 -2.6184 -2.0128 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = -60.510007 kcal Electronic energy + Delta-G solvation = -13210.797711 eV Core-core repulsion = 11004.991310 eV Total energy + Delta-G solvation = -2205.806401 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.24987 -37.68925 -35.19276 -33.27058 -30.90399 -29.17496 -27.49985 -24.76257 -23.50471 -21.65897 -20.96970 -19.24710 -17.39330 -16.93080 -16.22540 -15.88417 -15.60647 -15.38608 -15.03249 -14.65060 -13.99686 -13.54497 -13.05917 -12.99985 -12.82458 -12.41213 -12.29129 -11.99846 -11.80273 -11.64818 -11.38005 -11.15915 -10.73520 -10.29290 -9.45127 -8.32301 -6.36492 1.34603 1.36603 1.46817 2.32889 2.92062 3.05186 3.18891 3.46156 3.98752 4.07785 4.17321 4.36763 4.47252 4.50905 4.62093 4.66547 4.73675 4.81051 4.89376 4.97392 5.02284 5.18052 5.27688 5.31855 5.52456 5.91770 6.08916 6.25740 6.28603 6.69944 7.29531 8.84034 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.013152 C = 0.011950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.468069 B = 2128.438404 C = 2342.616477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.517 5.517 3 C 0.041 3.959 4 C 0.019 3.981 5 H 0.040 0.960 6 C -0.513 4.513 7 H 0.035 0.965 8 C 0.017 3.983 9 N -0.946 5.946 10 Si 0.938 3.062 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.248 1.248 14 C -0.114 4.114 15 H 0.086 0.914 16 C 0.070 3.930 17 O -0.395 6.395 18 C 0.075 3.925 19 C 0.028 3.972 20 H 0.080 0.920 21 H 0.026 0.974 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.267 0.733 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -10.754 3.426 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.241 5.241 3 C -0.088 4.088 4 C -0.001 4.001 5 H 0.058 0.942 6 C -0.551 4.551 7 H 0.053 0.947 8 C -0.181 4.181 9 N -0.585 5.585 10 Si 0.762 3.238 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.172 1.172 14 C -0.133 4.133 15 H 0.104 0.896 16 C -0.006 4.006 17 O -0.314 6.314 18 C -0.001 4.001 19 C -0.081 4.081 20 H 0.098 0.902 21 H 0.045 0.955 22 H 0.105 0.895 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.614 -11.064 4.016 13.041 hybrid contribution 0.037 1.449 -0.416 1.508 sum -5.577 -9.615 3.600 11.684 Atomic orbital electron populations 1.22591 0.87059 1.02917 1.01039 1.65420 1.09256 1.15688 1.33780 1.23387 0.97050 0.88864 0.99460 1.19868 0.93342 0.92403 0.94461 0.94155 1.21213 1.36544 1.01406 0.95956 0.94701 1.25898 0.95557 0.94634 1.01984 1.70040 1.42986 1.06469 1.39044 0.85876 0.80039 0.77395 0.80525 1.18954 1.21378 1.17201 1.23609 0.94196 0.95697 0.99844 0.89604 1.23285 0.93538 0.84467 0.99305 1.88025 1.26626 1.37725 1.79055 1.22987 0.85680 0.93180 0.98274 1.24063 0.95814 0.95768 0.92441 0.90232 0.95537 0.89493 0.90931 0.91904 0.95001 0.92439 0.92251 0.91014 0.89000 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.49 127.69 1.21 1.54 16 2 N -0.52 -17.89 5.23 -879.13 -4.60 -22.48 16 3 C 0.04 1.68 6.01 86.44 0.52 2.20 16 4 C 0.02 0.85 2.18 -10.67 -0.02 0.83 16 5 H 0.04 1.86 4.46 -2.39 -0.01 1.85 16 6 C -0.51 -28.33 8.64 25.60 0.22 -28.11 16 7 H 0.03 2.13 8.03 -2.91 -0.02 2.11 16 8 C 0.02 0.97 5.47 84.66 0.46 1.43 16 9 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 10 Si 0.94 43.49 26.98 68.60 1.85 45.34 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.25 -10.82 6.74 99.48 0.67 -10.15 16 14 C -0.11 -4.45 3.77 -8.56 -0.03 -4.49 16 15 H 0.09 3.48 7.82 -2.39 -0.02 3.46 16 16 C 0.07 2.50 7.46 72.85 0.54 3.05 16 17 O -0.39 -13.47 11.27 -148.98 -1.68 -15.15 16 18 C 0.08 2.15 7.39 72.27 0.53 2.68 16 19 C 0.03 0.93 3.23 45.88 0.15 1.07 16 20 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 21 H 0.03 0.71 8.02 -2.39 -0.02 0.69 16 22 H 0.09 1.90 7.89 -2.39 -0.02 1.88 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.06 2.59 8.01 -2.39 -0.02 2.57 16 25 H 0.03 1.40 7.68 -2.39 -0.02 1.38 16 26 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.06 2.20 7.10 -2.39 -0.02 2.18 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 2.35 7.83 -2.39 -0.02 2.33 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -62.53 239.58 0.53 -62.00 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.07 Total: 7.68 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.59 Total: -19.79 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -4.30 Total: -80.07 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.68 Total: -15.15 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.85 Total: 45.34 kcal Total: -62.53 0.53 -62.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.489 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds