Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.50336 * 110.99750 * 2 1 4 4 C 1.55909 * 106.24749 * 214.76437 * 3 2 1 5 5 H 1.09003 * 110.69887 * 234.70946 * 4 3 2 6 6 C 1.50703 * 110.69282 * 111.67728 * 4 3 2 7 7 H 1.08006 * 120.00159 * 243.77841 * 6 4 3 8 8 C 1.37877 * 120.00120 * 63.78210 * 6 4 3 9 9 N 1.31514 * 120.00089 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99938 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 C 1.51282 * 103.23518 * 353.19732 * 4 3 2 15 15 H 1.09005 * 111.26611 * 275.97207 * 14 4 3 16 16 C 1.51453 * 123.37812 * 138.56010 * 14 4 3 17 17 O 1.45890 * 102.97408 * 209.72081 * 16 14 4 18 18 C 1.45563 * 109.03151 * 25.94666 * 17 16 14 19 19 C 1.43358 * 111.00509 * 246.43372 * 2 1 3 20 20 H 1.08997 * 108.20856 * 55.35656 * 19 2 1 21 21 H 1.09004 * 109.46948 * 59.87806 * 1 2 3 22 22 H 1.09001 * 109.46758 * 179.86827 * 1 2 3 23 23 H 1.08991 * 109.47859 * 299.87371 * 1 2 3 24 24 H 1.09001 * 110.09925 * 95.56733 * 3 2 1 25 25 H 1.09004 * 110.09847 * 333.96755 * 3 2 1 26 26 H 0.96998 * 119.99255 * 0.02562 * 9 8 6 27 27 H 1.09009 * 110.56799 * 91.39516 * 16 14 4 28 28 H 1.08999 * 110.95099 * 328.22844 * 16 14 4 29 29 H 1.09002 * 110.30075 * 247.10889 * 18 17 16 30 30 H 1.08993 * 110.30887 * 124.95006 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0077 1.4035 0.0000 4 6 3.3120 1.3702 -0.8535 5 1 4.1536 1.7684 -0.2867 6 6 3.1274 2.1361 -2.1382 7 1 3.1841 1.6220 -3.0864 8 6 2.8864 3.4932 -2.1032 9 7 2.8170 4.1192 -0.9487 10 14 2.6570 4.4424 -3.6956 11 1 3.9735 4.9400 -4.1694 12 1 1.7486 5.5932 -3.4594 13 1 2.0664 3.5486 -4.7240 14 6 3.5053 -0.1040 -1.1331 15 1 4.0177 -0.5990 -0.3081 16 6 3.9428 -0.6467 -2.4776 17 8 3.3172 -1.9640 -2.5185 18 6 2.1355 -1.9547 -1.6686 19 6 1.9828 -0.5351 -1.2267 20 1 1.5555 0.0342 -2.0521 21 1 -0.3633 0.5157 -0.8889 22 1 -0.3633 -1.0277 -0.0024 23 1 -0.3634 0.5118 0.8910 24 1 2.2346 1.7177 1.0188 25 1 1.2832 2.0828 -0.4493 26 1 2.9357 3.6261 -0.1219 27 1 5.0286 -0.7336 -2.5206 28 1 3.5749 -0.0194 -3.2896 29 1 2.2845 -2.6051 -0.8066 30 1 1.2596 -2.2709 -2.2350 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = -21.936564 kcal Electronic energy + Delta-G solvation = -13372.578118 eV Core-core repulsion = 11168.444387 eV Total energy + Delta-G solvation = -2204.133731 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.15619 -36.37174 -33.56771 -31.14751 -28.89826 -27.38442 -25.39876 -23.71343 -22.15007 -19.86142 -19.35512 -16.98606 -16.23532 -15.19487 -14.40522 -14.19999 -13.93719 -13.72819 -13.06570 -12.93525 -12.33042 -11.99845 -11.68700 -11.40941 -10.89604 -10.84470 -10.57676 -10.34716 -10.17427 -9.77708 -9.31590 -9.15987 -8.59281 -8.45064 -7.79505 -6.45557 -4.19508 3.37199 3.39280 3.54841 4.23684 4.37535 4.44627 4.85607 5.27336 5.56601 5.69830 5.74789 5.83190 5.91717 5.96819 6.12069 6.19710 6.23558 6.32046 6.43433 6.50466 6.76445 6.87096 6.94097 7.14670 7.36863 7.44784 7.73413 8.11137 8.31560 8.75648 9.52761 10.92336 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036463 B = 0.014409 C = 0.012067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.720635 B = 1942.819156 C = 2319.738497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.498 5.498 3 C 0.041 3.959 4 C 0.041 3.959 5 H 0.030 0.970 6 C -0.598 4.598 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.908 5.908 10 Si 1.067 2.933 11 H -0.286 1.286 12 H -0.284 1.284 13 H -0.289 1.289 14 C -0.115 4.115 15 H 0.071 0.929 16 C 0.064 3.936 17 O -0.399 6.399 18 C 0.081 3.919 19 C 0.009 3.991 20 H 0.055 0.945 21 H 0.027 0.973 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.272 0.728 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -6.899 -0.480 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.223 5.223 3 C -0.086 4.086 4 C 0.022 3.978 5 H 0.048 0.952 6 C -0.636 4.636 7 H 0.075 0.925 8 C -0.183 4.183 9 N -0.543 5.543 10 Si 0.895 3.105 11 H -0.213 1.213 12 H -0.210 1.210 13 H -0.215 1.215 14 C -0.134 4.134 15 H 0.090 0.910 16 C -0.011 4.011 17 O -0.319 6.319 18 C 0.004 3.996 19 C -0.102 4.102 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.395 -5.864 -0.747 6.378 hybrid contribution -0.204 -0.819 0.144 0.857 sum -2.599 -6.683 -0.603 7.196 Atomic orbital electron populations 1.22501 0.89374 1.00881 1.00673 1.64156 1.07161 1.17984 1.32950 1.24190 0.98992 0.86097 0.99294 1.19132 0.92557 0.90066 0.96060 0.95213 1.22027 1.54378 0.95216 0.91991 0.92478 1.25796 0.93641 0.95393 1.03517 1.70773 1.45465 1.39756 0.98315 0.83560 0.77006 0.75734 0.74175 1.21269 1.20993 1.21502 1.22921 0.94327 0.99692 0.96468 0.91032 1.22762 0.97184 0.83133 0.98053 1.89227 1.40904 1.33166 1.68612 1.21771 0.88428 0.95451 0.93979 1.22689 0.98040 0.95646 0.93777 0.92713 0.95398 0.92256 0.91855 0.92487 0.92347 0.91693 0.90349 0.90189 0.91664 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.45 60.06 0.57 0.82 16 2 N -0.50 -10.03 5.58 -231.07 -1.29 -11.32 16 3 C 0.04 0.94 4.90 -0.34 0.00 0.93 16 4 C 0.04 0.99 2.49 -91.08 -0.23 0.76 16 5 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 6 C -0.60 -15.77 7.51 -34.44 -0.26 -16.03 16 7 H 0.06 1.50 5.52 -52.48 -0.29 1.21 16 8 C 0.02 0.58 5.10 -17.82 -0.09 0.49 16 9 N -0.91 -26.09 13.24 55.43 0.73 -25.35 16 10 Si 1.07 24.36 29.90 -169.99 -5.08 19.28 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 C -0.11 -2.45 3.35 -89.22 -0.30 -2.75 16 15 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.06 1.28 7.06 36.38 0.26 1.54 16 17 O -0.40 -7.83 11.59 -35.23 -0.41 -8.23 16 18 C 0.08 1.44 7.66 35.41 0.27 1.71 16 19 C 0.01 0.18 2.29 -68.29 -0.16 0.03 16 20 H 0.05 1.24 7.03 -51.93 -0.37 0.88 16 21 H 0.03 0.50 7.96 -51.93 -0.41 0.08 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.06 1.47 6.82 -51.93 -0.35 1.11 16 26 H 0.27 7.72 6.25 -40.82 -0.26 7.47 16 27 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 28 H 0.08 1.70 5.91 -51.93 -0.31 1.39 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 235.94 15.07 3.56 3.56 Total: -1.00 -28.20 235.94 -6.59 -34.78 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.15 Total: -0.22 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.56 Total: -36.67 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.41 Total: -8.23 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.20 -6.59 -34.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.848 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds