Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.50336 * 110.99750 * 2 1 4 4 C 1.55909 * 106.24749 * 214.76437 * 3 2 1 5 5 H 1.09003 * 110.69887 * 234.70946 * 4 3 2 6 6 C 1.50703 * 110.69282 * 111.67728 * 4 3 2 7 7 H 1.08006 * 120.00159 * 243.77841 * 6 4 3 8 8 C 1.37877 * 120.00120 * 63.78210 * 6 4 3 9 9 N 1.31514 * 120.00089 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99938 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 C 1.51282 * 103.23518 * 353.19732 * 4 3 2 15 15 H 1.09005 * 111.26611 * 275.97207 * 14 4 3 16 16 C 1.51453 * 123.37812 * 138.56010 * 14 4 3 17 17 O 1.45890 * 102.97408 * 209.72081 * 16 14 4 18 18 C 1.45563 * 109.03151 * 25.94666 * 17 16 14 19 19 C 1.43358 * 111.00509 * 246.43372 * 2 1 3 20 20 H 1.08997 * 108.20856 * 55.35656 * 19 2 1 21 21 H 1.09004 * 109.46948 * 59.87806 * 1 2 3 22 22 H 1.09001 * 109.46758 * 179.86827 * 1 2 3 23 23 H 1.08991 * 109.47859 * 299.87371 * 1 2 3 24 24 H 1.09001 * 110.09925 * 95.56733 * 3 2 1 25 25 H 1.09004 * 110.09847 * 333.96755 * 3 2 1 26 26 H 0.96998 * 119.99255 * 0.02562 * 9 8 6 27 27 H 1.09009 * 110.56799 * 91.39516 * 16 14 4 28 28 H 1.08999 * 110.95099 * 328.22844 * 16 14 4 29 29 H 1.09002 * 110.30075 * 247.10889 * 18 17 16 30 30 H 1.08993 * 110.30887 * 124.95006 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0077 1.4035 0.0000 4 6 3.3120 1.3702 -0.8535 5 1 4.1536 1.7684 -0.2867 6 6 3.1274 2.1361 -2.1382 7 1 3.1841 1.6220 -3.0864 8 6 2.8864 3.4932 -2.1032 9 7 2.8170 4.1192 -0.9487 10 14 2.6570 4.4424 -3.6956 11 1 3.9735 4.9400 -4.1694 12 1 1.7486 5.5932 -3.4594 13 1 2.0664 3.5486 -4.7240 14 6 3.5053 -0.1040 -1.1331 15 1 4.0177 -0.5990 -0.3081 16 6 3.9428 -0.6467 -2.4776 17 8 3.3172 -1.9640 -2.5185 18 6 2.1355 -1.9547 -1.6686 19 6 1.9828 -0.5351 -1.2267 20 1 1.5555 0.0342 -2.0521 21 1 -0.3633 0.5157 -0.8889 22 1 -0.3633 -1.0277 -0.0024 23 1 -0.3634 0.5118 0.8910 24 1 2.2346 1.7177 1.0188 25 1 1.2832 2.0828 -0.4493 26 1 2.9357 3.6261 -0.1219 27 1 5.0286 -0.7336 -2.5206 28 1 3.5749 -0.0194 -3.2896 29 1 2.2845 -2.6051 -0.8066 30 1 1.2596 -2.2709 -2.2350 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = -42.121721 kcal Electronic energy + Delta-G solvation = -13373.453412 eV Core-core repulsion = 11168.444387 eV Total energy + Delta-G solvation = -2205.009025 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.81767 -37.99254 -35.48935 -32.92902 -30.52537 -29.01842 -27.24517 -25.47769 -23.85931 -21.57645 -21.09431 -18.83205 -17.98829 -16.80115 -16.09625 -15.87334 -15.61201 -15.42465 -14.78152 -14.56402 -14.00336 -13.58846 -13.49839 -13.16604 -12.63458 -12.49925 -12.23792 -12.10692 -11.97910 -11.56722 -11.03062 -10.77536 -10.59306 -10.37007 -9.51419 -8.61193 -6.35025 1.51857 1.58601 1.75481 2.52475 2.62748 2.83867 3.12501 3.30650 3.97011 4.14036 4.21223 4.33526 4.36923 4.45343 4.48476 4.58020 4.61462 4.80981 4.85323 4.88960 5.01347 5.04440 5.20511 5.38531 5.52944 5.79320 6.07737 6.10884 6.23284 6.61991 7.44345 8.77412 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036463 B = 0.014409 C = 0.012067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.720635 B = 1942.819156 C = 2319.738497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.494 5.494 3 C 0.053 3.947 4 C 0.032 3.968 5 H 0.005 0.995 6 C -0.601 4.601 7 H 0.057 0.943 8 C -0.026 4.026 9 N -0.934 5.934 10 Si 1.109 2.891 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.120 4.120 15 H 0.078 0.922 16 C 0.070 3.930 17 O -0.403 6.403 18 C 0.084 3.916 19 C 0.022 3.978 20 H 0.025 0.975 21 H 0.017 0.983 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -8.332 -1.058 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.218 5.218 3 C -0.074 4.074 4 C 0.013 3.987 5 H 0.023 0.977 6 C -0.638 4.638 7 H 0.075 0.925 8 C -0.226 4.226 9 N -0.571 5.571 10 Si 0.932 3.068 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.140 4.140 15 H 0.096 0.904 16 C -0.005 4.005 17 O -0.323 6.323 18 C 0.007 3.993 19 C -0.089 4.089 20 H 0.043 0.957 21 H 0.036 0.964 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.898 -7.326 -1.321 7.989 hybrid contribution -0.056 -0.417 0.366 0.558 sum -2.955 -7.743 -0.955 8.342 Atomic orbital electron populations 1.22618 0.87189 1.02989 1.00743 1.64170 1.09204 1.15722 1.32753 1.23880 0.97667 0.87437 0.98462 1.19097 0.92370 0.91919 0.95287 0.97737 1.22303 1.53210 0.95502 0.92820 0.92507 1.27063 0.93172 0.96912 1.05415 1.70873 1.47677 1.39959 0.98622 0.83005 0.77519 0.74837 0.71408 1.19928 1.21226 1.19902 1.22890 0.95889 0.97588 0.97590 0.90373 1.22651 0.98205 0.83176 0.96500 1.89221 1.41547 1.32426 1.69098 1.21938 0.88758 0.93733 0.94827 1.22679 0.96614 0.97039 0.92586 0.95666 0.96446 0.89056 0.90759 0.92667 0.95162 0.92764 0.88659 0.91749 0.89658 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.42 9.45 127.69 1.21 1.62 16 2 N -0.49 -19.21 5.58 -884.98 -4.94 -24.16 16 3 C 0.05 2.45 4.90 86.64 0.42 2.87 16 4 C 0.03 1.59 2.49 -11.09 -0.03 1.56 16 5 H 0.00 0.24 8.00 -2.39 -0.02 0.22 16 6 C -0.60 -31.99 7.51 25.60 0.19 -31.80 16 7 H 0.06 2.98 5.52 -2.91 -0.02 2.97 16 8 C -0.03 -1.45 5.10 84.65 0.43 -1.02 16 9 N -0.93 -54.84 13.24 21.45 0.28 -54.56 16 10 Si 1.11 48.96 29.90 68.60 2.05 51.01 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 C -0.12 -5.03 3.35 -9.89 -0.03 -5.07 16 15 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 16 C 0.07 2.71 7.06 71.48 0.50 3.21 16 17 O -0.40 -14.71 11.59 -148.98 -1.73 -16.43 16 18 C 0.08 2.71 7.66 70.85 0.54 3.25 16 19 C 0.02 0.83 2.29 46.41 0.11 0.94 16 20 H 0.03 1.13 7.03 -2.39 -0.02 1.11 16 21 H 0.02 0.59 7.96 -2.38 -0.02 0.57 16 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 24 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.03 1.55 6.82 -2.39 -0.02 1.54 16 26 H 0.26 15.40 6.25 -92.71 -0.58 14.82 16 27 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 28 H 0.06 2.68 5.91 -2.39 -0.01 2.67 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -59.81 235.94 0.32 -59.49 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.30 Total: 9.07 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.35 Total: -24.42 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -4.66 Total: -78.72 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.73 Total: -16.43 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.01 kcal Total: -59.81 0.32 -59.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.366 kcal (2) G-P(sol) polarization free energy of solvation -59.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds