Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.51656 * 110.71327 * 2 1 4 4 C 1.56021 * 106.05515 * 146.18875 * 3 2 1 5 5 H 1.08995 * 110.74614 * 247.64135 * 4 3 2 6 6 C 1.50693 * 110.74656 * 124.28753 * 4 3 2 7 7 H 1.08003 * 120.00453 * 246.62869 * 6 4 3 8 8 C 1.37877 * 119.99993 * 66.63292 * 6 4 3 9 9 N 1.31517 * 120.00179 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 120.00257 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47041 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47281 * 119.99448 * 10 8 6 13 13 H 1.48503 * 109.47439 * 239.99789 * 10 8 6 14 14 C 1.50706 * 102.78868 * 5.96386 * 4 3 2 15 15 H 1.09001 * 110.14668 * 81.63592 * 14 4 3 16 16 C 1.50428 * 125.57087 * 217.16360 * 14 4 3 17 17 O 1.45411 * 105.24893 * 143.14685 * 16 14 4 18 18 C 1.45992 * 109.04865 * 353.09373 * 17 16 14 19 19 C 1.44083 * 110.99695 * 112.66672 * 2 1 3 20 20 H 1.09002 * 109.93890 * 308.33828 * 19 2 1 21 21 H 1.08997 * 109.47345 * 307.33588 * 1 2 3 22 22 H 1.09005 * 109.46834 * 67.33715 * 1 2 3 23 23 H 1.08998 * 109.47312 * 187.33220 * 1 2 3 24 24 H 1.09001 * 110.56697 * 26.83612 * 3 2 1 25 25 H 1.09002 * 109.76816 * 265.11655 * 3 2 1 26 26 H 0.96996 * 120.00586 * 180.02562 * 9 8 6 27 27 H 1.09003 * 110.29414 * 262.05812 * 16 14 4 28 28 H 1.08993 * 110.29846 * 24.19540 * 16 14 4 29 29 H 1.08993 * 110.76876 * 216.42840 * 18 17 16 30 30 H 1.09004 * 110.76264 * 93.03214 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0054 1.4185 0.0000 4 6 3.3233 1.3815 0.8343 5 1 3.2072 1.9379 1.7643 6 6 4.4794 1.9178 0.0302 7 1 5.2841 1.2601 -0.2635 8 6 4.5099 3.2482 -0.3305 9 7 3.5298 4.0491 0.0268 10 14 5.9434 3.9133 -1.3267 11 1 6.9081 2.8174 -1.5983 12 1 5.4409 4.4609 -2.6124 13 1 6.6210 4.9902 -0.5610 14 6 3.5019 -0.0892 1.1108 15 1 3.9587 -0.5800 0.2514 16 6 4.0317 -0.6814 2.3881 17 8 3.2648 -1.9000 2.5916 18 6 2.2035 -1.9677 1.5914 19 6 1.9853 -0.5184 1.2413 20 1 1.5251 0.0018 2.0814 21 1 -0.3634 0.6232 0.8171 22 1 -0.3633 0.3960 -0.9484 23 1 -0.3634 -1.0192 0.1311 24 1 1.2891 2.0988 0.4607 25 1 2.2175 1.7325 -1.0221 26 1 3.5510 4.9850 -0.2273 27 1 5.0914 -0.9151 2.2854 28 1 3.8743 0.0073 3.2180 29 1 1.2991 -2.4029 2.0163 30 1 2.5312 -2.5312 0.7177 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077339.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -22.325002 kcal Electronic energy + Delta-G solvation = -13134.508002 eV Core-core repulsion = 10930.357427 eV Total energy + Delta-G solvation = -2204.150575 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99399 -36.25345 -33.29861 -31.21850 -28.95526 -27.55458 -25.65004 -23.42229 -21.99385 -19.98645 -19.12566 -16.64164 -16.04108 -15.25889 -14.60136 -14.31445 -13.95854 -13.70383 -12.96914 -12.73818 -12.24804 -11.92114 -11.76348 -11.17369 -11.09675 -10.84511 -10.71176 -10.42739 -10.11609 -9.63706 -9.23118 -9.13244 -8.90703 -8.51608 -7.84835 -6.10653 -4.13825 3.26608 3.35129 3.39427 4.25862 4.35973 4.39024 4.95840 5.25377 5.58442 5.63771 5.67053 5.80396 5.87910 5.95523 6.12444 6.20245 6.29035 6.29814 6.49484 6.61810 6.83763 7.02055 7.09541 7.22390 7.51260 7.73713 7.78962 7.89340 8.31845 8.88868 9.51441 10.99454 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042995 B = 0.012077 C = 0.010130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.076665 B = 2317.964205 C = 2763.505223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.498 5.498 3 C 0.058 3.942 4 C 0.063 3.937 5 H 0.036 0.964 6 C -0.510 4.510 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.119 4.119 15 H 0.083 0.917 16 C 0.066 3.934 17 O -0.399 6.399 18 C 0.076 3.924 19 C 0.000 4.000 20 H 0.046 0.954 21 H 0.022 0.978 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 -6.518 1.502 7.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.224 5.224 3 C -0.068 4.068 4 C 0.044 3.956 5 H 0.054 0.946 6 C -0.548 4.548 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.138 4.138 15 H 0.101 0.899 16 C -0.010 4.010 17 O -0.318 6.318 18 C -0.001 4.001 19 C -0.111 4.111 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.222 -6.805 1.171 7.620 hybrid contribution 0.202 1.212 -0.050 1.230 sum -3.020 -5.593 1.120 6.454 Atomic orbital electron populations 1.22529 0.89963 1.00447 1.00736 1.65207 1.06715 1.19347 1.31091 1.24330 0.96395 0.83589 1.02467 1.18858 0.92926 0.88109 0.95714 0.94631 1.21143 1.05586 0.94202 1.33891 0.92154 1.25012 0.96064 0.96982 0.95891 1.69960 1.31765 1.05264 1.45962 0.86519 0.82568 0.78964 0.79893 1.19647 1.20987 1.21027 1.22817 0.92703 1.01096 0.97166 0.89875 1.22269 0.95158 0.85947 0.97658 1.89222 1.45460 1.42889 1.54270 1.22271 0.90428 0.95251 0.92109 1.23195 0.98723 0.95984 0.93151 0.93568 0.95902 0.91701 0.92456 0.94657 0.90070 0.92913 0.90782 0.91745 0.90530 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.51 60.06 0.57 0.78 16 2 N -0.50 -9.96 5.65 -228.79 -1.29 -11.25 16 3 C 0.06 1.35 5.77 0.50 0.00 1.35 16 4 C 0.06 1.54 2.66 -91.31 -0.24 1.30 16 5 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.51 -13.64 8.29 -34.44 -0.29 -13.93 16 7 H 0.06 1.61 7.72 -52.48 -0.41 1.20 16 8 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 9 N -0.89 -24.99 12.79 55.43 0.71 -24.28 16 10 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C -0.12 -2.51 2.48 -90.22 -0.22 -2.73 16 15 H 0.08 1.84 7.93 -51.93 -0.41 1.43 16 16 C 0.07 1.24 7.63 35.87 0.27 1.51 16 17 O -0.40 -7.43 11.58 -35.23 -0.41 -7.84 16 18 C 0.08 1.29 7.63 36.00 0.27 1.56 16 19 C 0.00 0.00 2.35 -67.54 -0.16 -0.15 16 20 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 21 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.84 7.72 -51.93 -0.40 0.43 16 25 H 0.08 2.06 7.70 -51.93 -0.40 1.66 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 244.84 15.07 3.69 3.69 Total: -1.00 -27.75 244.84 -6.75 -34.50 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.54 Total: -1.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 0.12 Total: -8.72 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.58 Total: -35.54 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.41 Total: -7.84 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.75 -6.75 -34.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077339.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.175 kcal (2) G-P(sol) polarization free energy of solvation -27.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds