Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.51656 * 110.71327 * 2 1 4 4 C 1.56021 * 106.05515 * 146.18875 * 3 2 1 5 5 H 1.08995 * 110.74614 * 247.64135 * 4 3 2 6 6 C 1.50693 * 110.74656 * 124.28753 * 4 3 2 7 7 H 1.08003 * 120.00453 * 246.62869 * 6 4 3 8 8 C 1.37877 * 119.99993 * 66.63292 * 6 4 3 9 9 N 1.31517 * 120.00179 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 120.00257 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47041 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47281 * 119.99448 * 10 8 6 13 13 H 1.48503 * 109.47439 * 239.99789 * 10 8 6 14 14 C 1.50706 * 102.78868 * 5.96386 * 4 3 2 15 15 H 1.09001 * 110.14668 * 81.63592 * 14 4 3 16 16 C 1.50428 * 125.57087 * 217.16360 * 14 4 3 17 17 O 1.45411 * 105.24893 * 143.14685 * 16 14 4 18 18 C 1.45992 * 109.04865 * 353.09373 * 17 16 14 19 19 C 1.44083 * 110.99695 * 112.66672 * 2 1 3 20 20 H 1.09002 * 109.93890 * 308.33828 * 19 2 1 21 21 H 1.08997 * 109.47345 * 307.33588 * 1 2 3 22 22 H 1.09005 * 109.46834 * 67.33715 * 1 2 3 23 23 H 1.08998 * 109.47312 * 187.33220 * 1 2 3 24 24 H 1.09001 * 110.56697 * 26.83612 * 3 2 1 25 25 H 1.09002 * 109.76816 * 265.11655 * 3 2 1 26 26 H 0.96996 * 120.00586 * 180.02562 * 9 8 6 27 27 H 1.09003 * 110.29414 * 262.05812 * 16 14 4 28 28 H 1.08993 * 110.29846 * 24.19540 * 16 14 4 29 29 H 1.08993 * 110.76876 * 216.42840 * 18 17 16 30 30 H 1.09004 * 110.76264 * 93.03214 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0054 1.4185 0.0000 4 6 3.3233 1.3815 0.8343 5 1 3.2072 1.9379 1.7643 6 6 4.4794 1.9178 0.0302 7 1 5.2841 1.2601 -0.2635 8 6 4.5099 3.2482 -0.3305 9 7 3.5298 4.0491 0.0268 10 14 5.9434 3.9133 -1.3267 11 1 6.9081 2.8174 -1.5983 12 1 5.4409 4.4609 -2.6124 13 1 6.6210 4.9902 -0.5610 14 6 3.5019 -0.0892 1.1108 15 1 3.9587 -0.5800 0.2514 16 6 4.0317 -0.6814 2.3881 17 8 3.2648 -1.9000 2.5916 18 6 2.2035 -1.9677 1.5914 19 6 1.9853 -0.5184 1.2413 20 1 1.5251 0.0018 2.0814 21 1 -0.3634 0.6232 0.8171 22 1 -0.3633 0.3960 -0.9484 23 1 -0.3634 -1.0192 0.1311 24 1 1.2891 2.0988 0.4607 25 1 2.2175 1.7325 -1.0221 26 1 3.5510 4.9850 -0.2273 27 1 5.0914 -0.9151 2.2854 28 1 3.8743 0.0073 3.2180 29 1 1.2991 -2.4029 2.0163 30 1 2.5312 -2.5312 0.7177 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077339.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -42.037761 kcal Electronic energy + Delta-G solvation = -13135.362812 eV Core-core repulsion = 10930.357427 eV Total energy + Delta-G solvation = -2205.005384 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.59100 -37.82256 -35.22372 -32.99017 -30.55702 -29.14942 -27.42323 -25.14941 -23.67712 -21.57665 -20.87031 -18.49111 -17.74321 -16.93217 -16.29918 -16.00035 -15.57645 -15.22224 -14.64399 -14.28920 -13.91563 -13.53982 -13.35131 -12.98861 -12.91574 -12.65096 -12.40265 -12.13035 -11.82298 -11.39300 -11.09167 -10.79461 -10.58023 -10.57171 -9.48657 -8.18198 -6.27934 1.40498 1.43155 1.54382 2.41762 2.71646 2.85954 3.11281 3.46005 3.97768 4.19012 4.24853 4.36157 4.44247 4.51351 4.63237 4.66897 4.76586 4.86082 4.87528 4.94083 5.09267 5.25796 5.36010 5.52763 5.69460 5.77164 5.94944 6.24693 6.29068 6.80481 7.40683 8.91817 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042995 B = 0.012077 C = 0.010130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.076665 B = 2317.964205 C = 2763.505223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.502 5.502 3 C 0.071 3.929 4 C 0.058 3.942 5 H 0.006 0.994 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.016 3.984 9 N -0.921 5.921 10 Si 0.956 3.044 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.280 1.280 14 C -0.123 4.123 15 H 0.072 0.928 16 C 0.071 3.929 17 O -0.403 6.403 18 C 0.082 3.918 19 C 0.010 3.990 20 H 0.038 0.962 21 H 0.023 0.977 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 -7.827 1.384 8.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.227 5.227 3 C -0.055 4.055 4 C 0.039 3.961 5 H 0.025 0.975 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.184 4.184 9 N -0.560 5.560 10 Si 0.781 3.219 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.206 1.206 14 C -0.142 4.142 15 H 0.090 0.910 16 C -0.005 4.005 17 O -0.322 6.322 18 C 0.006 3.994 19 C -0.101 4.101 20 H 0.056 0.944 21 H 0.041 0.959 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.360 -8.135 1.055 8.864 hybrid contribution 0.196 1.609 -0.005 1.621 sum -3.165 -6.526 1.050 7.328 Atomic orbital electron populations 1.22642 0.87419 1.02517 1.01223 1.65133 1.09164 1.16715 1.31647 1.23945 0.95784 0.85622 1.00187 1.18759 0.93082 0.89998 0.94304 0.97549 1.21439 1.06219 0.94594 1.34166 0.92515 1.25756 0.98451 0.97284 0.96867 1.70066 1.33396 1.05505 1.47009 0.85535 0.79609 0.78329 0.78394 1.19023 1.20654 1.20600 1.22677 0.94891 0.98633 0.97975 0.90987 1.22210 0.95888 0.86082 0.96339 1.89218 1.45860 1.42346 1.54812 1.22428 0.91205 0.93385 0.92424 1.23217 0.96794 0.97685 0.92373 0.94429 0.95885 0.91010 0.89329 0.96022 0.92831 0.92832 0.89585 0.91723 0.87238 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.51 127.69 1.21 1.53 16 2 N -0.50 -19.49 5.65 -877.76 -4.96 -24.45 16 3 C 0.07 3.38 5.77 86.41 0.50 3.88 16 4 C 0.06 2.89 2.66 -11.24 -0.03 2.86 16 5 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 6 C -0.53 -28.62 8.29 25.60 0.21 -28.41 16 7 H 0.06 3.05 7.72 -2.91 -0.02 3.03 16 8 C 0.02 0.85 5.31 84.65 0.45 1.30 16 9 N -0.92 -52.65 12.79 21.45 0.27 -52.38 16 10 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 14 C -0.12 -5.13 2.48 -10.53 -0.03 -5.16 16 15 H 0.07 3.17 7.93 -2.39 -0.02 3.15 16 16 C 0.07 2.59 7.63 71.15 0.54 3.13 16 17 O -0.40 -13.97 11.58 -148.98 -1.73 -15.69 16 18 C 0.08 2.50 7.63 71.23 0.54 3.05 16 19 C 0.01 0.37 2.35 46.53 0.11 0.48 16 20 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 21 H 0.02 0.71 7.91 -2.39 -0.02 0.69 16 22 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 23 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.02 1.05 7.72 -2.39 -0.02 1.03 16 25 H 0.05 2.80 7.70 -2.39 -0.02 2.78 16 26 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -59.02 244.84 0.23 -58.79 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.10 Total: 5.94 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 3.51 Total: -17.34 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -4.69 Total: -76.83 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.73 Total: -15.69 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -59.02 0.23 -58.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077339.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.757 kcal (2) G-P(sol) polarization free energy of solvation -59.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds