Wall clock time and date at job start Mon Mar 30 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46638 * 2 1 4 4 C 1.52998 * 109.47173 * 119.99578 * 2 1 3 5 5 H 1.09002 * 110.97529 * 55.91578 * 4 2 1 6 6 C 1.54847 * 111.07512 * 180.02562 * 4 2 1 7 7 N 1.47606 * 101.89333 * 141.22768 * 6 4 2 8 8 C 1.28634 * 108.54674 * 345.04490 * 7 6 4 9 9 C 1.50700 * 122.93826 * 179.59127 * 8 7 6 10 10 C 1.50699 * 109.47255 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99463 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00143 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99753 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00206 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46830 * 89.99699 * 14 12 10 16 16 H 1.48488 * 109.47498 * 209.99959 * 14 12 10 17 17 H 1.48494 * 109.47033 * 330.00315 * 14 12 10 18 18 O 1.34601 * 114.12407 * 359.59502 * 8 7 6 19 19 H 1.08996 * 109.47197 * 299.99632 * 1 2 3 20 20 H 1.08999 * 109.47153 * 60.00192 * 1 2 3 21 21 H 1.09001 * 109.46579 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47197 * 240.00368 * 2 1 3 23 23 H 1.08996 * 109.47026 * 60.00263 * 3 2 1 24 24 H 1.09000 * 109.46911 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47192 * 299.99784 * 3 2 1 26 26 H 1.09001 * 110.94802 * 23.07571 * 6 4 2 27 27 H 1.09002 * 110.95075 * 259.37544 * 6 4 2 28 28 H 1.08996 * 109.47150 * 119.97988 * 9 8 7 29 29 H 1.09010 * 109.46999 * 239.97782 * 9 8 7 30 30 H 0.97007 * 119.99603 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6323 -1.7302 1.3111 6 6 3.5879 -0.7422 1.2871 7 7 3.8601 -0.5260 2.7217 8 6 2.7831 -0.1023 3.2831 9 6 2.6959 0.2147 4.7538 10 6 4.0307 -0.0441 5.4036 11 1 4.8592 -0.4028 4.8108 12 6 4.1940 0.1759 6.7548 13 7 3.1849 0.6122 7.4766 14 14 5.8484 -0.1457 7.5604 15 1 6.6708 1.0899 7.5123 16 1 5.6407 -0.5472 8.9747 17 1 6.5491 -1.2351 6.8343 18 8 1.7409 0.0330 2.4422 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 4.0035 0.0661 0.6855 27 1 3.9727 -1.7078 0.9588 28 1 2.4254 1.2625 4.8842 29 1 1.9377 -0.4166 5.2173 30 1 3.2997 0.7667 8.4274 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260094054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:13 Heat of formation + Delta-G solvation = -28.846550 kcal Electronic energy + Delta-G solvation = -12589.336986 eV Core-core repulsion = 10384.903616 eV Total energy + Delta-G solvation = -2204.433370 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.64376 -35.43675 -33.38681 -32.56056 -30.04423 -27.23538 -26.95537 -23.57215 -22.85833 -20.27091 -19.03643 -16.41989 -16.09363 -15.62578 -14.67311 -14.50009 -14.18591 -13.36669 -12.93464 -12.62929 -12.31997 -12.06121 -11.84007 -11.58160 -11.18564 -10.94736 -10.84597 -10.73885 -10.65444 -10.44796 -9.88125 -9.49501 -8.91342 -8.49924 -8.17837 -6.02570 -4.02213 3.10059 3.37358 3.42477 3.48923 3.92959 4.51446 4.73005 4.78958 4.97643 5.13270 5.35434 5.36652 5.54170 5.62403 5.70675 5.83038 5.87726 5.94609 6.03274 6.09827 6.32237 6.41531 6.66409 7.21939 7.34856 7.38931 8.02118 8.20668 8.79194 9.10359 9.61662 11.09826 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069935 B = 0.008078 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.274951 B = 3465.252054 C = 3661.790345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.149 4.149 4 C 0.047 3.953 5 H 0.082 0.918 6 C -0.012 4.012 7 N -0.541 5.541 8 C 0.322 3.678 9 C 0.084 3.916 10 C -0.507 4.507 11 H 0.082 0.918 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.903 3.097 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.272 1.272 18 O -0.348 6.348 19 H 0.064 0.936 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -1.081 -13.065 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.012 4.012 5 H 0.100 0.900 6 C -0.142 4.142 7 N -0.276 5.276 8 C 0.098 3.902 9 C 0.046 3.954 10 C -0.546 4.546 11 H 0.100 0.900 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.731 3.269 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.197 1.197 18 O -0.252 6.252 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.109 -1.143 -12.762 13.185 hybrid contribution 0.185 -0.164 -0.028 0.249 sum -2.923 -1.306 -12.790 13.185 Atomic orbital electron populations 1.21807 0.94506 1.01745 1.02214 1.21152 0.96669 0.97057 0.95615 1.21852 1.01101 0.95481 1.02220 1.24087 0.96759 0.94931 0.85381 0.90023 1.24185 0.92770 1.02537 0.94708 1.74967 1.24959 1.25046 1.02661 1.26923 0.81132 0.86614 0.95501 1.18186 1.00075 0.98887 0.78221 1.21195 0.96172 1.44037 0.93170 0.90039 1.25010 0.97162 0.95279 0.97236 1.69968 1.30762 1.46246 1.07097 0.86399 0.83666 0.78664 0.78162 1.20667 1.21360 1.19683 1.86971 1.44153 1.67352 1.26764 0.91720 0.92716 0.92823 0.90008 0.91582 0.92506 0.92721 0.89984 0.89749 0.93083 0.93061 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.13 37.16 0.34 -1.33 16 2 C -0.09 -1.08 2.89 -90.62 -0.26 -1.35 16 3 C -0.15 -1.94 8.75 37.16 0.32 -1.61 16 4 C 0.05 0.75 3.47 -25.76 -0.09 0.66 16 5 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 6 C -0.01 -0.22 7.51 -2.46 -0.02 -0.23 16 7 N -0.54 -12.39 10.20 -56.98 -0.58 -12.97 16 8 C 0.32 7.49 7.68 -13.62 -0.10 7.39 16 9 C 0.08 2.20 5.60 -29.04 -0.16 2.04 16 10 C -0.51 -14.53 8.95 -34.44 -0.31 -14.84 16 11 H 0.08 2.37 6.77 -52.49 -0.36 2.02 16 12 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 14 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 O -0.35 -7.02 9.77 -15.58 -0.15 -7.17 16 19 H 0.06 0.85 7.99 -51.93 -0.42 0.43 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 24 H 0.06 0.76 6.19 -51.93 -0.32 0.43 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.33 5.93 -51.93 -0.31 1.02 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.05 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -30.23 251.43 -5.92 -36.15 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.31 Total: -3.12 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.38 Total: -7.83 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.15 Total: -38.86 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.15 Total: -7.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.23 -5.92 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.301 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds