Wall clock time and date at job start Mon Mar 30 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46638 * 2 1 4 4 C 1.52998 * 109.47173 * 119.99578 * 2 1 3 5 5 H 1.09002 * 110.97529 * 55.91578 * 4 2 1 6 6 C 1.54847 * 111.07512 * 180.02562 * 4 2 1 7 7 N 1.47606 * 101.89333 * 141.22768 * 6 4 2 8 8 C 1.28634 * 108.54674 * 345.04490 * 7 6 4 9 9 C 1.50700 * 122.93826 * 179.59127 * 8 7 6 10 10 C 1.50699 * 109.47255 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99463 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00143 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99753 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00206 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46830 * 89.99699 * 14 12 10 16 16 H 1.48488 * 109.47498 * 209.99959 * 14 12 10 17 17 H 1.48494 * 109.47033 * 330.00315 * 14 12 10 18 18 O 1.34601 * 114.12407 * 359.59502 * 8 7 6 19 19 H 1.08996 * 109.47197 * 299.99632 * 1 2 3 20 20 H 1.08999 * 109.47153 * 60.00192 * 1 2 3 21 21 H 1.09001 * 109.46579 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47197 * 240.00368 * 2 1 3 23 23 H 1.08996 * 109.47026 * 60.00263 * 3 2 1 24 24 H 1.09000 * 109.46911 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47192 * 299.99784 * 3 2 1 26 26 H 1.09001 * 110.94802 * 23.07571 * 6 4 2 27 27 H 1.09002 * 110.95075 * 259.37544 * 6 4 2 28 28 H 1.08996 * 109.47150 * 119.97988 * 9 8 7 29 29 H 1.09010 * 109.46999 * 239.97782 * 9 8 7 30 30 H 0.97007 * 119.99603 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6323 -1.7302 1.3111 6 6 3.5879 -0.7422 1.2871 7 7 3.8601 -0.5260 2.7217 8 6 2.7831 -0.1023 3.2831 9 6 2.6959 0.2147 4.7538 10 6 4.0307 -0.0441 5.4036 11 1 4.8592 -0.4028 4.8108 12 6 4.1940 0.1759 6.7548 13 7 3.1849 0.6122 7.4766 14 14 5.8484 -0.1457 7.5604 15 1 6.6708 1.0899 7.5123 16 1 5.6407 -0.5472 8.9747 17 1 6.5491 -1.2351 6.8343 18 8 1.7409 0.0330 2.4422 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 4.0035 0.0661 0.6855 27 1 3.9727 -1.7078 0.9588 28 1 2.4254 1.2625 4.8842 29 1 1.9377 -0.4166 5.2173 30 1 3.2997 0.7667 8.4274 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:13 Heat of formation + Delta-G solvation = -50.621816 kcal Electronic energy + Delta-G solvation = -12590.281232 eV Core-core repulsion = 10384.903616 eV Total energy + Delta-G solvation = -2205.377617 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.17803 -36.66398 -35.32975 -34.30888 -31.87461 -28.70209 -28.13048 -25.59586 -24.24040 -21.68398 -20.50998 -18.34260 -17.74401 -17.28928 -16.31243 -16.05966 -15.47770 -14.82892 -14.42248 -14.17042 -13.81203 -13.51908 -13.42945 -12.99353 -12.73817 -12.69851 -12.47121 -11.99579 -11.93228 -11.83438 -11.72662 -11.45095 -10.70082 -10.61975 -9.86518 -8.21635 -6.29186 1.34150 1.43943 1.45427 1.57629 2.33870 2.56021 3.14108 3.38072 3.58665 3.83386 3.99387 4.07808 4.37485 4.49297 4.59730 4.72053 4.80179 4.92762 4.97574 5.04147 5.10620 5.19986 5.24552 5.35742 5.44620 5.49983 5.80755 6.08228 6.83346 7.09759 7.39083 8.91429 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069935 B = 0.008078 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.274951 B = 3465.252054 C = 3661.790345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.149 4.149 4 C 0.043 3.957 5 H 0.093 0.907 6 C -0.014 4.014 7 N -0.567 5.567 8 C 0.314 3.686 9 C 0.088 3.912 10 C -0.525 4.525 11 H 0.074 0.926 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.971 3.029 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.269 1.269 18 O -0.356 6.356 19 H 0.040 0.960 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.116 0.884 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.032 0.968 29 H 0.035 0.965 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -1.675 -14.704 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.014 4.014 5 H 0.111 0.889 6 C -0.143 4.143 7 N -0.304 5.304 8 C 0.090 3.910 9 C 0.050 3.950 10 C -0.563 4.563 11 H 0.092 0.908 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.193 1.193 18 O -0.261 6.261 19 H 0.059 0.941 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.134 0.866 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.542 -1.737 -14.422 14.747 hybrid contribution -0.024 0.011 0.388 0.389 sum -2.566 -1.726 -14.034 14.371 Atomic orbital electron populations 1.21797 0.93636 1.02454 1.02200 1.21254 0.97368 0.96551 0.94751 1.21849 1.00719 0.95912 1.02115 1.24462 0.96029 0.95733 0.85207 0.88905 1.24350 0.93988 1.04240 0.91726 1.74845 1.25322 1.24077 1.06131 1.26177 0.82365 0.87788 0.94691 1.17862 0.98841 0.97423 0.80858 1.21408 0.96781 1.44392 0.93751 0.90789 1.25883 1.00954 0.94797 0.97729 1.70074 1.32780 1.46786 1.07547 0.85347 0.79027 0.78731 0.77327 1.19807 1.20354 1.19342 1.86948 1.43288 1.67921 1.27919 0.94111 0.90375 0.91792 0.86625 0.94485 0.93039 0.90025 0.88519 0.87541 0.94965 0.94737 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.13 71.98 0.66 -2.26 16 2 C -0.08 -1.79 2.89 -10.79 -0.03 -1.83 16 3 C -0.15 -3.55 8.75 71.98 0.63 -2.92 16 4 C 0.04 1.30 3.47 31.22 0.11 1.41 16 5 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 6 C -0.01 -0.47 7.51 86.80 0.65 0.18 16 7 N -0.57 -25.87 10.20 -449.42 -4.59 -30.46 16 8 C 0.31 14.90 7.68 88.58 0.68 15.58 16 9 C 0.09 4.80 5.60 29.10 0.16 4.96 16 10 C -0.53 -30.70 8.95 25.60 0.23 -30.47 16 11 H 0.07 4.37 6.77 -2.91 -0.02 4.35 16 12 C 0.00 0.24 5.46 84.65 0.46 0.71 16 13 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 14 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 O -0.36 -14.45 9.77 -78.67 -0.77 -15.22 16 19 H 0.04 1.02 7.99 -2.39 -0.02 1.00 16 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.04 1.09 7.57 -2.39 -0.02 1.07 16 24 H 0.05 1.27 6.19 -2.39 -0.01 1.25 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.10 2.90 5.93 -2.39 -0.01 2.89 16 27 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -65.38 251.43 1.62 -63.77 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.11 Total: 4.82 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 3.55 Total: -14.64 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -4.30 Total: -86.05 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.77 Total: -15.22 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.38 1.62 -63.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.146 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds