Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.08996 * 110.95009 * 305.70633 * 4 2 1 6 6 C 1.54850 * 111.08014 * 181.62739 * 4 2 1 7 7 N 1.47603 * 101.89574 * 218.77417 * 6 4 2 8 8 C 1.28643 * 108.54638 * 14.95857 * 7 6 4 9 9 C 1.50696 * 122.93712 * 180.40893 * 8 7 6 10 10 C 1.50701 * 109.47332 * 359.96714 * 9 8 7 11 11 H 1.07994 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99950 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99551 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00207 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47077 * 89.99609 * 14 12 10 16 16 H 1.48496 * 109.47360 * 210.00203 * 14 12 10 17 17 H 1.48502 * 109.47144 * 329.99838 * 14 12 10 18 18 O 1.34654 * 114.14209 * 0.36608 * 8 7 6 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08994 * 110.94807 * 336.92890 * 6 4 2 27 27 H 1.09002 * 110.94656 * 100.62879 * 6 4 2 28 28 H 1.08999 * 109.47267 * 119.97164 * 9 8 7 29 29 H 1.09001 * 109.47220 * 239.97094 * 9 8 7 30 30 H 0.97007 * 119.99751 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6099 -1.7198 -1.3255 6 6 3.5874 -0.7786 -1.2663 7 7 3.8842 -0.5555 -2.6949 8 6 2.8253 -0.1011 -3.2667 9 6 2.7657 0.2317 -4.7353 10 6 4.1034 -0.0513 -5.3692 11 1 4.9152 -0.4342 -4.7687 12 6 4.2906 0.1787 -6.7157 13 7 5.4578 -0.0687 -7.2689 14 14 2.8866 0.8418 -7.7541 15 1 2.9250 2.3263 -7.7486 16 1 3.0256 0.3481 -9.1477 17 1 1.5929 0.3780 -7.1915 18 8 1.7742 0.0505 -2.4388 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 4.0136 0.0140 -0.6513 27 1 3.9448 -1.7560 -0.9422 28 1 2.0000 -0.3777 -5.2152 29 1 2.5210 1.2866 -4.8592 30 1 5.5895 0.0927 -8.2163 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260094059.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = -23.734709 kcal Electronic energy + Delta-G solvation = -12619.948236 eV Core-core repulsion = 10415.736532 eV Total energy + Delta-G solvation = -2204.211704 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.72828 -35.50604 -33.39928 -32.57652 -30.47438 -27.46703 -27.15471 -23.36994 -22.83913 -20.25129 -19.03946 -16.75708 -16.38541 -15.61527 -14.69880 -14.55295 -14.10787 -13.47673 -12.99822 -12.72450 -12.56029 -12.18527 -12.04687 -11.79956 -11.30348 -11.03038 -10.87659 -10.79218 -10.51957 -10.45950 -9.92932 -9.57677 -8.93173 -8.57840 -8.33178 -6.00702 -4.00312 2.98793 3.31214 3.38696 3.39798 3.83424 4.44010 4.67052 4.71203 4.91284 5.07962 5.26800 5.30410 5.49023 5.57157 5.65659 5.78511 5.82590 5.88459 5.98292 6.04124 6.25959 6.35358 6.53849 6.75025 6.97076 7.14138 7.59976 8.48314 8.71926 9.21611 9.56877 11.11872 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059315 B = 0.008802 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.943695 B = 3180.372642 C = 3447.946096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.149 4.149 4 C 0.047 3.953 5 H 0.083 0.917 6 C -0.013 4.013 7 N -0.524 5.524 8 C 0.322 3.678 9 C 0.052 3.948 10 C -0.513 4.513 11 H 0.100 0.900 12 C 0.070 3.930 13 N -0.897 5.897 14 Si 0.870 3.130 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.265 1.265 18 O -0.349 6.349 19 H 0.053 0.947 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 0.603 12.871 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.011 4.011 5 H 0.101 0.899 6 C -0.143 4.143 7 N -0.258 5.258 8 C 0.097 3.903 9 C 0.015 3.985 10 C -0.551 4.551 11 H 0.118 0.882 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.697 3.303 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.190 1.190 18 O -0.254 6.254 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.677 0.484 12.579 15.289 hybrid contribution -1.271 0.335 -0.141 1.322 sum -9.948 0.819 12.438 15.948 Atomic orbital electron populations 1.21813 0.94527 1.01749 1.02186 1.21162 0.96622 0.97117 0.95634 1.21842 1.01182 0.95421 1.02191 1.24105 0.97074 0.94640 0.85259 0.89884 1.24222 0.92560 1.02848 0.94657 1.75032 1.24976 1.23218 1.02575 1.26294 0.81266 0.87843 0.94904 1.18572 1.00765 0.97967 0.81226 1.21035 0.95918 1.43924 0.94259 0.88232 1.24926 0.95470 0.95220 0.97522 1.69885 1.22696 1.48839 1.12115 0.86942 0.83476 0.79741 0.80172 1.20078 1.21099 1.18956 1.86963 1.44306 1.66366 1.27768 0.92794 0.91830 0.92664 0.89882 0.92688 0.92461 0.91627 0.89767 0.89434 0.93289 0.93722 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.14 37.16 0.34 -1.24 16 2 C -0.09 -1.04 2.87 -90.62 -0.26 -1.30 16 3 C -0.15 -1.86 8.75 37.16 0.32 -1.53 16 4 C 0.05 0.73 3.45 -25.76 -0.09 0.64 16 5 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.01 -0.23 7.51 -2.46 -0.02 -0.25 16 7 N -0.52 -11.97 10.21 -56.97 -0.58 -12.55 16 8 C 0.32 7.24 7.68 -13.62 -0.10 7.13 16 9 C 0.05 1.28 4.67 -29.04 -0.14 1.15 16 10 C -0.51 -14.84 9.51 -34.44 -0.33 -15.17 16 11 H 0.10 3.19 7.01 -52.49 -0.37 2.82 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 14 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 18 O -0.35 -6.72 9.78 -15.73 -0.15 -6.87 16 19 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 20 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.74 6.27 -51.93 -0.33 0.42 16 25 H 0.06 0.94 7.54 -51.93 -0.39 0.55 16 26 H 0.08 1.34 6.03 -51.93 -0.31 1.03 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.05 1.16 7.20 -51.93 -0.37 0.79 16 29 H 0.04 1.05 7.57 -51.93 -0.39 0.65 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 248.03 15.07 3.74 3.74 Total: -1.00 -31.28 248.03 -5.55 -36.83 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.29 Total: -1.99 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.37 Total: -8.63 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.19 Total: -39.48 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.15 Total: -6.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.28 -5.55 -36.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094059.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds