Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.08996 * 110.95009 * 305.70633 * 4 2 1 6 6 C 1.54850 * 111.08014 * 181.62739 * 4 2 1 7 7 N 1.47603 * 101.89574 * 218.77417 * 6 4 2 8 8 C 1.28643 * 108.54638 * 14.95857 * 7 6 4 9 9 C 1.50696 * 122.93712 * 180.40893 * 8 7 6 10 10 C 1.50701 * 109.47332 * 359.96714 * 9 8 7 11 11 H 1.07994 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99950 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99551 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00207 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47077 * 89.99609 * 14 12 10 16 16 H 1.48496 * 109.47360 * 210.00203 * 14 12 10 17 17 H 1.48502 * 109.47144 * 329.99838 * 14 12 10 18 18 O 1.34654 * 114.14209 * 0.36608 * 8 7 6 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08994 * 110.94807 * 336.92890 * 6 4 2 27 27 H 1.09002 * 110.94656 * 100.62879 * 6 4 2 28 28 H 1.08999 * 109.47267 * 119.97164 * 9 8 7 29 29 H 1.09001 * 109.47220 * 239.97094 * 9 8 7 30 30 H 0.97007 * 119.99751 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6099 -1.7198 -1.3255 6 6 3.5874 -0.7786 -1.2663 7 7 3.8842 -0.5555 -2.6949 8 6 2.8253 -0.1011 -3.2667 9 6 2.7657 0.2317 -4.7353 10 6 4.1034 -0.0513 -5.3692 11 1 4.9152 -0.4342 -4.7687 12 6 4.2906 0.1787 -6.7157 13 7 5.4578 -0.0687 -7.2689 14 14 2.8866 0.8418 -7.7541 15 1 2.9250 2.3263 -7.7486 16 1 3.0256 0.3481 -9.1477 17 1 1.5929 0.3780 -7.1915 18 8 1.7742 0.0505 -2.4388 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 4.0136 0.0140 -0.6513 27 1 3.9448 -1.7560 -0.9422 28 1 2.0000 -0.3777 -5.2152 29 1 2.5210 1.2866 -4.8592 30 1 5.5895 0.0927 -8.2163 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094059.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = -47.480492 kcal Electronic energy + Delta-G solvation = -12620.977930 eV Core-core repulsion = 10415.736532 eV Total energy + Delta-G solvation = -2205.241399 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.19676 -36.67412 -35.26673 -34.32395 -32.32271 -28.97057 -28.12552 -25.25080 -24.25363 -21.59202 -20.48716 -18.83953 -17.76643 -17.22361 -16.22844 -16.08838 -15.47064 -14.88574 -14.62725 -14.27571 -13.86420 -13.59237 -13.53051 -12.98753 -12.71455 -12.64321 -12.39695 -11.93942 -11.89530 -11.79875 -11.71774 -11.54016 -10.75728 -10.69115 -9.91689 -8.22649 -6.29470 1.31150 1.42438 1.43940 1.54426 2.37943 2.39875 3.10028 3.35499 3.57118 3.83414 3.96273 4.07847 4.35922 4.48401 4.56180 4.70671 4.77408 4.82165 4.94066 4.97849 5.02920 5.06375 5.17122 5.36423 5.39962 5.44211 5.55415 6.33078 6.84404 7.09309 7.32117 8.93613 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059315 B = 0.008802 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.943695 B = 3180.372642 C = 3447.946096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.149 4.149 4 C 0.046 3.954 5 H 0.096 0.904 6 C -0.016 4.016 7 N -0.569 5.569 8 C 0.315 3.685 9 C 0.053 3.947 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.948 3.052 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.239 1.239 18 O -0.351 6.351 19 H 0.063 0.937 20 H 0.044 0.956 21 H 0.076 0.924 22 H 0.113 0.887 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 0.962 14.052 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.011 4.011 5 H 0.113 0.887 6 C -0.145 4.145 7 N -0.304 5.304 8 C 0.090 3.910 9 C 0.015 3.985 10 C -0.563 4.563 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.589 5.589 14 Si 0.770 3.230 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.163 1.163 18 O -0.255 6.255 19 H 0.082 0.918 20 H 0.063 0.937 21 H 0.095 0.905 22 H 0.131 0.869 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.064 0.839 13.797 17.705 hybrid contribution -0.438 0.171 -0.382 0.606 sum -11.501 1.010 13.415 17.699 Atomic orbital electron populations 1.21796 0.93339 1.02513 1.02354 1.21255 0.97543 0.96538 0.94648 1.21840 1.00534 0.95922 1.02302 1.24441 0.95865 0.95519 0.85303 0.88671 1.24359 0.94212 1.04093 0.91814 1.74962 1.26158 1.23253 1.06065 1.25839 0.82256 0.88310 0.94616 1.18400 0.98373 0.98905 0.82772 1.21164 0.96942 1.43660 0.94493 0.92908 1.25926 0.98615 0.95370 0.98982 1.70056 1.25556 1.50542 1.12759 0.85711 0.80255 0.79326 0.77726 1.18914 1.20873 1.16253 1.86941 1.43099 1.66838 1.28641 0.91768 0.93692 0.90491 0.86950 0.90093 0.93445 0.93989 0.88663 0.87866 0.92011 0.92355 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.14 71.98 0.66 -1.96 16 2 C -0.08 -1.70 2.87 -10.79 -0.03 -1.73 16 3 C -0.15 -3.37 8.75 71.98 0.63 -2.74 16 4 C 0.05 1.33 3.45 31.22 0.11 1.44 16 5 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 6 C -0.02 -0.53 7.51 86.80 0.65 0.12 16 7 N -0.57 -26.31 10.21 -449.35 -4.59 -30.90 16 8 C 0.31 14.13 7.68 88.57 0.68 14.81 16 9 C 0.05 2.58 4.67 29.10 0.14 2.71 16 10 C -0.52 -31.07 9.51 25.60 0.24 -30.82 16 11 H 0.05 3.55 7.01 -2.91 -0.02 3.53 16 12 C 0.01 0.46 5.47 84.66 0.46 0.92 16 13 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 14 Si 0.95 43.11 27.47 68.60 1.88 44.99 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 18 O -0.35 -13.07 9.78 -79.19 -0.77 -13.84 16 19 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.04 0.99 8.04 -2.39 -0.02 0.97 16 21 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 22 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.15 6.27 -2.39 -0.01 1.14 16 25 H 0.04 1.14 7.54 -2.39 -0.02 1.12 16 26 H 0.10 2.92 6.03 -2.39 -0.01 2.90 16 27 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.06 2.82 7.20 -2.39 -0.02 2.80 16 29 H 0.06 2.65 7.57 -2.39 -0.02 2.63 16 30 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -69.53 248.03 1.42 -68.11 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.06 Total: 8.83 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.54 Total: -17.25 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.29 Total: -90.85 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.77 Total: -13.84 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -69.53 1.42 -68.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094059.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.632 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds