Wall clock time and date at job start Mon Mar 30 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47337 * 2 1 4 4 C 1.52999 * 109.47194 * 239.99726 * 2 1 3 5 5 C 1.53004 * 109.47026 * 119.99905 * 2 1 3 6 6 H 1.08998 * 110.90006 * 296.08115 * 5 2 1 7 7 C 1.54786 * 111.01862 * 60.00022 * 5 2 1 8 8 N 1.47585 * 102.13678 * 141.74556 * 7 5 2 9 9 C 1.30688 * 108.30311 * 345.04942 * 8 7 5 10 10 C 1.41263 * 123.21484 * 179.32875 * 9 8 7 11 11 H 1.08003 * 120.00188 * 180.02562 * 10 9 8 12 12 C 1.40215 * 120.00114 * 359.97438 * 10 9 8 13 13 N 1.30604 * 120.00011 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00369 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46877 * 60.00580 * 14 12 10 16 16 H 1.48500 * 109.47198 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47087 * 300.00498 * 14 12 10 18 18 O 1.35194 * 113.56563 * 359.32844 * 9 8 7 19 19 H 1.09007 * 109.46780 * 300.00009 * 1 2 3 20 20 H 1.08998 * 109.47600 * 59.99908 * 1 2 3 21 21 H 1.09006 * 109.47288 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47000 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.46851 * 300.00551 * 3 2 1 24 24 H 1.09001 * 109.46998 * 59.99853 * 3 2 1 25 25 H 1.08995 * 109.47212 * 300.00237 * 4 2 1 26 26 H 1.09001 * 109.46896 * 60.00106 * 4 2 1 27 27 H 1.08999 * 109.47238 * 179.97438 * 4 2 1 28 28 H 1.09002 * 110.90471 * 259.96505 * 7 5 2 29 29 H 1.09003 * 110.90689 * 23.52458 * 7 5 2 30 30 H 0.96993 * 120.00473 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.7475 -0.1871 2.1533 7 6 1.5439 -2.1870 1.2855 8 7 2.7180 -2.8987 1.8270 9 6 3.7526 -2.1043 1.7462 10 6 5.0432 -2.4668 2.1919 11 1 5.8620 -1.7686 2.1003 12 6 5.2609 -3.7328 2.7541 13 7 4.2706 -4.5770 2.8652 14 14 6.9672 -4.2119 3.3440 15 1 7.4078 -3.2687 4.4030 16 1 6.9320 -5.5914 3.8927 17 1 7.9184 -4.1568 2.2050 18 8 3.4697 -0.9026 1.1954 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 3.1301 1.4424 -0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7209 -1.2494 28 1 0.6858 -2.2909 1.9495 29 1 1.3027 -2.5409 0.2831 30 1 4.4212 -5.4528 3.2538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:40 Heat of formation + Delta-G solvation = -31.169117 kcal Electronic energy + Delta-G solvation = -12972.856754 eV Core-core repulsion = 10768.322669 eV Total energy + Delta-G solvation = -2204.534085 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.62516 -35.99256 -33.36731 -31.23707 -28.53442 -26.94040 -26.88716 -25.30888 -21.92869 -20.06590 -18.24076 -16.68495 -15.58920 -15.13138 -14.74552 -13.77030 -13.60612 -13.20962 -12.48936 -12.25037 -11.98476 -11.76584 -11.68528 -11.32533 -11.23859 -11.13666 -10.64707 -10.49293 -10.40358 -10.10031 -9.97083 -9.87706 -9.04999 -7.72636 -7.27533 -6.36415 -4.57942 3.12878 3.18071 3.20589 4.04234 4.19890 4.76553 5.13578 5.20926 5.44651 5.56534 5.78637 5.89284 5.89949 6.04989 6.07685 6.13285 6.22951 6.32484 6.43537 6.47984 6.60774 6.73587 6.79312 7.00885 7.03691 7.41174 7.87348 8.26622 8.84857 9.05447 10.19120 10.54900 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069354 B = 0.009666 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.626931 B = 2896.134160 C = 3093.975264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.137 4.137 5 C 0.059 3.941 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.600 5.600 9 C 0.375 3.625 10 C -0.453 4.453 11 H 0.081 0.919 12 C 0.077 3.923 13 N -0.735 5.735 14 Si 0.916 3.084 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.266 1.266 18 O -0.366 6.366 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 6.148 -3.694 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 C -0.193 4.193 4 C -0.194 4.194 5 C 0.000 4.000 6 H 0.079 0.921 7 C -0.124 4.124 8 N -0.346 5.346 9 C 0.174 3.826 10 C -0.491 4.491 11 H 0.099 0.901 12 C -0.146 4.146 13 N -0.360 5.360 14 Si 0.741 3.259 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.191 1.191 18 O -0.274 6.274 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.588 5.318 -3.496 7.306 hybrid contribution 0.522 0.502 0.052 0.726 sum -3.066 5.820 -3.444 7.425 Atomic orbital electron populations 1.21821 0.94373 1.02053 1.01222 1.20533 0.94983 0.95481 0.95165 1.21817 1.01875 0.94994 1.00621 1.21813 1.02151 0.99972 0.95455 1.23715 0.81718 0.98671 0.95939 0.92051 1.23866 0.99842 0.89896 0.98828 1.76256 0.96305 1.25912 1.36131 1.22011 0.95600 0.78415 0.86584 1.18491 0.91839 1.00256 1.38549 0.90068 1.25734 0.98382 0.95710 0.94814 1.70017 1.31257 1.05288 1.29430 0.86264 0.82101 0.77968 0.79606 1.19129 1.20399 1.19113 1.86902 1.22488 1.40029 1.78009 0.92880 0.92694 0.92230 0.91982 0.93279 0.93179 0.92447 0.93535 0.91833 0.93017 0.93289 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.25 37.16 0.31 -1.66 16 2 C -0.06 -1.05 0.65 -154.51 -0.10 -1.16 16 3 C -0.14 -2.09 8.40 37.16 0.31 -1.78 16 4 C -0.14 -2.38 8.03 37.16 0.30 -2.08 16 5 C 0.06 1.28 2.95 -25.79 -0.08 1.20 16 6 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 7 C 0.01 0.16 6.44 -2.51 -0.02 0.14 16 8 N -0.60 -17.55 9.69 -59.52 -0.58 -18.13 16 9 C 0.37 10.86 7.43 -16.89 -0.13 10.73 16 10 C -0.45 -12.94 9.50 -37.69 -0.36 -13.30 16 11 H 0.08 2.19 7.85 -52.48 -0.41 1.77 16 12 C 0.08 2.09 5.50 -17.33 -0.10 1.99 16 13 N -0.73 -20.92 11.74 55.56 0.65 -20.26 16 14 Si 0.92 19.66 29.56 -169.99 -5.02 14.63 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 O -0.37 -9.49 9.78 -17.28 -0.17 -9.66 16 19 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.87 7.15 -51.93 -0.37 0.50 16 22 H 0.06 1.04 7.98 -51.93 -0.41 0.63 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.05 6.18 -51.93 -0.32 0.73 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.23 7.58 -51.93 -0.39 0.84 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.13 5.70 -51.93 -0.30 0.84 16 30 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 LS Contribution 246.97 15.07 3.72 3.72 Total: -1.00 -30.88 246.97 -5.55 -36.44 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.30 Total: -0.83 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.14 Total: -5.91 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.08 Total: -38.39 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.17 Total: -9.66 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.88 -5.55 -36.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.267 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds