Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47337 * 2 1 4 4 C 1.52999 * 109.47194 * 239.99726 * 2 1 3 5 5 C 1.53004 * 109.47026 * 119.99905 * 2 1 3 6 6 H 1.08998 * 110.90006 * 296.08115 * 5 2 1 7 7 C 1.54786 * 111.01862 * 60.00022 * 5 2 1 8 8 N 1.47585 * 102.13678 * 141.74556 * 7 5 2 9 9 C 1.30688 * 108.30311 * 345.04942 * 8 7 5 10 10 C 1.41263 * 123.21484 * 179.32875 * 9 8 7 11 11 H 1.08003 * 120.00188 * 180.02562 * 10 9 8 12 12 C 1.40215 * 120.00114 * 359.97438 * 10 9 8 13 13 N 1.30604 * 120.00011 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00369 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46877 * 60.00580 * 14 12 10 16 16 H 1.48500 * 109.47198 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47087 * 300.00498 * 14 12 10 18 18 O 1.35194 * 113.56563 * 359.32844 * 9 8 7 19 19 H 1.09007 * 109.46780 * 300.00009 * 1 2 3 20 20 H 1.08998 * 109.47600 * 59.99908 * 1 2 3 21 21 H 1.09006 * 109.47288 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47000 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.46851 * 300.00551 * 3 2 1 24 24 H 1.09001 * 109.46998 * 59.99853 * 3 2 1 25 25 H 1.08995 * 109.47212 * 300.00237 * 4 2 1 26 26 H 1.09001 * 109.46896 * 60.00106 * 4 2 1 27 27 H 1.08999 * 109.47238 * 179.97438 * 4 2 1 28 28 H 1.09002 * 110.90471 * 259.96505 * 7 5 2 29 29 H 1.09003 * 110.90689 * 23.52458 * 7 5 2 30 30 H 0.96993 * 120.00473 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.7475 -0.1871 2.1533 7 6 1.5439 -2.1870 1.2855 8 7 2.7180 -2.8987 1.8270 9 6 3.7526 -2.1043 1.7462 10 6 5.0432 -2.4668 2.1919 11 1 5.8620 -1.7686 2.1003 12 6 5.2609 -3.7328 2.7541 13 7 4.2706 -4.5770 2.8652 14 14 6.9672 -4.2119 3.3440 15 1 7.4078 -3.2687 4.4030 16 1 6.9320 -5.5914 3.8927 17 1 7.9184 -4.1568 2.2050 18 8 3.4697 -0.9026 1.1954 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 3.1301 1.4424 -0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7209 -1.2494 28 1 0.6858 -2.2909 1.9495 29 1 1.3027 -2.5409 0.2831 30 1 4.4212 -5.4528 3.2538 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260118351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = -54.027166 kcal Electronic energy + Delta-G solvation = -12973.847953 eV Core-core repulsion = 10768.322669 eV Total energy + Delta-G solvation = -2205.525284 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.50999 -37.53094 -35.41296 -33.27980 -30.49816 -28.24587 -28.17639 -27.23733 -23.74087 -22.12327 -19.75384 -18.74472 -17.46738 -17.07483 -16.34568 -15.53744 -15.00449 -14.61960 -14.31780 -14.12059 -13.59031 -13.21098 -13.09605 -12.96203 -12.85681 -12.57157 -12.38647 -12.26806 -11.95395 -11.72483 -11.64618 -11.46345 -10.99225 -9.80539 -9.36368 -8.40200 -6.76723 1.42243 1.43158 1.57517 2.14339 2.25556 3.01730 3.33152 3.77705 3.81734 4.04443 4.13819 4.41952 4.51286 4.66706 4.75945 4.77831 4.86593 4.92476 4.98454 5.01459 5.04172 5.17518 5.22252 5.37024 5.46232 5.48469 5.88835 6.13381 6.73640 6.91249 8.09341 8.53275 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069354 B = 0.009666 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.626931 B = 2896.134160 C = 3093.975264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.131 4.131 4 C -0.133 4.133 5 C 0.057 3.943 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.644 5.644 9 C 0.354 3.646 10 C -0.489 4.489 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.775 5.775 14 Si 1.002 2.998 15 H -0.257 1.257 16 H -0.267 1.267 17 H -0.257 1.257 18 O -0.378 6.378 19 H 0.063 0.937 20 H 0.085 0.915 21 H 0.051 0.949 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 6.992 -4.050 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 C -0.189 4.189 4 C -0.190 4.190 5 C -0.001 4.001 6 H 0.079 0.921 7 C -0.125 4.125 8 N -0.391 5.391 9 C 0.153 3.847 10 C -0.527 4.527 11 H 0.105 0.895 12 C -0.191 4.191 13 N -0.401 5.401 14 Si 0.821 3.179 15 H -0.181 1.181 16 H -0.191 1.191 17 H -0.181 1.181 18 O -0.286 6.286 19 H 0.082 0.918 20 H 0.104 0.896 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.546 6.185 -3.864 8.109 hybrid contribution 0.411 0.261 0.138 0.506 sum -3.136 6.445 -3.726 8.078 Atomic orbital electron populations 1.21800 0.91587 1.02263 1.03282 1.20631 0.97065 0.95925 0.92369 1.21780 1.00480 0.93886 1.02704 1.21780 1.00259 0.99648 0.97303 1.23990 0.79623 0.97804 0.98675 0.92080 1.23854 0.98505 0.91174 0.98936 1.76146 0.98007 1.27755 1.37175 1.22341 0.96074 0.79397 0.86847 1.19011 0.92170 1.01690 1.39837 0.89546 1.26871 1.03381 0.94787 0.94013 1.70132 1.34155 1.05939 1.29856 0.84981 0.75546 0.78072 0.79275 1.18076 1.19075 1.18147 1.86874 1.25009 1.39010 1.77700 0.91842 0.89644 0.92999 0.94185 0.90075 0.92227 0.94064 0.89878 0.94715 0.92371 0.92737 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.25 71.98 0.59 -2.79 16 2 C -0.06 -1.95 0.65 -52.18 -0.03 -1.99 16 3 C -0.13 -3.73 8.40 71.98 0.60 -3.12 16 4 C -0.13 -4.48 8.03 71.98 0.58 -3.90 16 5 C 0.06 2.50 2.95 31.20 0.09 2.60 16 6 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 7 C 0.01 0.29 6.44 86.78 0.56 0.84 16 8 N -0.64 -38.80 9.69 -456.13 -4.42 -43.22 16 9 C 0.35 21.18 7.43 85.61 0.64 21.81 16 10 C -0.49 -28.61 9.50 23.49 0.22 -28.39 16 11 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 12 C 0.03 1.61 5.50 85.36 0.47 2.08 16 13 N -0.78 -44.90 11.74 21.87 0.26 -44.64 16 14 Si 1.00 40.12 29.56 68.60 2.03 42.14 16 15 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 16 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 O -0.38 -20.08 9.78 -84.74 -0.83 -20.91 16 19 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 20 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.05 1.41 7.15 -2.38 -0.02 1.39 16 22 H 0.04 1.30 7.98 -2.39 -0.02 1.28 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.49 6.18 -2.39 -0.01 1.48 16 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.03 1.34 7.58 -2.39 -0.02 1.32 16 28 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.05 2.56 5.70 -2.39 -0.01 2.55 16 30 H 0.28 14.61 8.29 -92.71 -0.77 13.84 16 Total: -1.00 -68.42 246.97 1.87 -66.55 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.11 Total: 12.94 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 3.72 Total: -12.86 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -4.16 Total: -87.86 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.83 Total: -20.91 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -68.42 1.87 -66.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds