Wall clock time and date at job start Mon Mar 30 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 C 1.52999 * 109.46908 * 240.00686 * 2 1 3 5 5 C 1.53003 * 109.47640 * 120.00338 * 2 1 3 6 6 H 1.08994 * 110.92552 * 301.40279 * 5 2 1 7 7 C 1.54780 * 111.01989 * 177.46050 * 5 2 1 8 8 N 1.47576 * 102.04933 * 218.06424 * 7 5 2 9 9 C 1.30626 * 108.34252 * 15.36404 * 8 7 5 10 10 C 1.41264 * 123.22354 * 180.48305 * 9 8 7 11 11 H 1.08002 * 119.99462 * 179.70794 * 10 9 8 12 12 C 1.40211 * 119.99896 * 359.70462 * 10 9 8 13 13 N 1.30596 * 120.00357 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99807 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46855 * 179.97438 * 14 12 10 16 16 H 1.48497 * 109.47173 * 300.00165 * 14 12 10 17 17 H 1.48498 * 109.46997 * 60.00311 * 14 12 10 18 18 O 1.35192 * 113.55284 * 0.21475 * 9 8 7 19 19 H 1.09007 * 109.46577 * 299.99066 * 1 2 3 20 20 H 1.08997 * 109.47567 * 59.99306 * 1 2 3 21 21 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47173 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47448 * 300.00767 * 3 2 1 24 24 H 1.08999 * 109.46616 * 60.00284 * 3 2 1 25 25 H 1.08999 * 109.47091 * 296.88865 * 4 2 1 26 26 H 1.08996 * 109.47530 * 56.88903 * 4 2 1 27 27 H 1.09001 * 109.47408 * 176.89442 * 4 2 1 28 28 H 1.09005 * 110.90571 * 336.48054 * 7 5 2 29 29 H 1.09004 * 110.90495 * 100.03724 * 7 5 2 30 30 H 0.97001 * 120.00460 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6698 -0.2408 2.1547 7 6 3.5860 -0.7978 1.2537 8 7 3.8263 -2.1418 1.8140 9 6 2.7084 -2.8153 1.7606 10 6 2.5815 -4.1428 2.2268 11 1 1.6299 -4.6494 2.1614 12 6 3.6910 -4.8026 2.7742 13 7 4.8415 -4.1898 2.8536 14 14 3.5234 -6.5583 3.3899 15 1 4.8309 -7.0247 3.9173 16 1 2.5066 -6.6087 4.4710 17 1 3.0998 -7.4371 2.2704 18 8 1.6829 -2.1183 1.2218 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.7228 -1.7636 -1.2220 26 1 1.6318 -0.2404 -2.1384 27 1 3.1285 -0.6732 -1.2777 28 1 3.9824 -0.7178 0.2414 29 1 4.0117 -0.0284 1.8979 30 1 5.6090 -4.6461 3.2327 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:41 Heat of formation + Delta-G solvation = -30.904548 kcal Electronic energy + Delta-G solvation = -12973.326840 eV Core-core repulsion = 10768.804228 eV Total energy + Delta-G solvation = -2204.522612 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.62980 -35.99341 -33.36781 -31.23918 -28.53525 -26.93839 -26.89282 -25.30961 -21.93013 -20.06502 -18.23792 -16.68344 -15.58780 -15.13038 -14.74413 -13.76995 -13.60840 -13.23024 -12.49641 -12.24316 -11.97601 -11.77175 -11.68450 -11.32618 -11.23130 -11.13082 -10.64569 -10.49250 -10.40075 -10.10137 -9.97342 -9.88049 -9.04974 -7.72261 -7.27562 -6.36306 -4.57910 3.12919 3.18105 3.20626 4.04256 4.20005 4.76592 5.13605 5.21127 5.44618 5.56605 5.78427 5.89051 5.90222 6.04923 6.08110 6.12784 6.22812 6.32423 6.43662 6.48090 6.61532 6.73185 6.79705 7.00801 7.03708 7.41182 7.87400 8.26712 8.84991 9.05538 10.19379 10.54993 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069345 B = 0.009667 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.678802 B = 2895.735444 C = 3093.552891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.059 3.941 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.600 5.600 9 C 0.375 3.625 10 C -0.453 4.453 11 H 0.081 0.919 12 C 0.077 3.923 13 N -0.735 5.735 14 Si 0.916 3.084 15 H -0.279 1.279 16 H -0.267 1.267 17 H -0.266 1.266 18 O -0.366 6.366 19 H 0.049 0.951 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 5.279 -3.693 7.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.000 4.000 6 H 0.079 0.921 7 C -0.125 4.125 8 N -0.346 5.346 9 C 0.174 3.826 10 C -0.492 4.492 11 H 0.099 0.901 12 C -0.146 4.146 13 N -0.360 5.360 14 Si 0.740 3.260 15 H -0.204 1.204 16 H -0.191 1.191 17 H -0.191 1.191 18 O -0.275 6.275 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.698 5.242 -3.507 7.311 hybrid contribution -0.656 -0.303 0.065 0.725 sum -4.353 4.939 -3.442 7.430 Atomic orbital electron populations 1.21808 0.94645 1.02238 1.00588 1.20531 0.95715 0.94778 0.95131 1.21815 1.01408 0.94994 1.01237 1.21832 1.01043 1.01076 0.95514 1.23715 0.97739 0.82632 0.95958 0.92052 1.23876 0.91200 0.98486 0.98906 1.76219 1.21623 1.01117 1.35658 1.21994 0.80859 0.93013 0.86722 1.18489 0.97585 0.94500 1.38578 0.90069 1.25730 0.94487 0.99553 0.94858 1.70015 1.00104 1.36042 1.29833 0.86267 0.78165 0.81866 0.79653 1.20400 1.19128 1.19114 1.86901 1.45182 1.16594 1.78778 0.93187 0.93308 0.91935 0.92272 0.92678 0.92880 0.91792 0.93500 0.92465 0.93209 0.93029 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.39 37.16 0.31 -1.78 16 2 C -0.06 -1.05 0.66 -154.51 -0.10 -1.16 16 3 C -0.14 -1.96 8.28 37.16 0.31 -1.65 16 4 C -0.14 -2.39 8.00 37.16 0.30 -2.09 16 5 C 0.06 1.28 2.95 -25.79 -0.08 1.20 16 6 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 7 C 0.01 0.15 6.49 -2.51 -0.02 0.13 16 8 N -0.60 -17.55 9.69 -59.54 -0.58 -18.13 16 9 C 0.37 10.87 7.43 -16.92 -0.13 10.74 16 10 C -0.45 -12.95 9.50 -37.69 -0.36 -13.31 16 11 H 0.08 2.19 7.85 -52.49 -0.41 1.77 16 12 C 0.08 2.09 5.50 -17.34 -0.10 2.00 16 13 N -0.73 -20.92 11.74 55.56 0.65 -20.27 16 14 Si 0.92 19.66 29.56 -169.99 -5.03 14.63 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 O -0.37 -9.49 9.71 -17.27 -0.17 -9.66 16 19 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 22 H 0.06 0.86 7.32 -51.93 -0.38 0.48 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.25 7.52 -51.93 -0.39 0.86 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.03 6.18 -51.93 -0.32 0.71 16 28 H 0.05 1.15 5.73 -51.93 -0.30 0.85 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 LS Contribution 247.01 15.07 3.72 3.72 Total: -1.00 -30.88 247.01 -5.56 -36.44 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.31 Total: -0.81 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.14 Total: -5.92 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.08 Total: -38.40 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.17 Total: -9.66 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.88 -5.56 -36.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds