Wall clock time and date at job start Mon Mar 30 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 C 1.52999 * 109.46908 * 240.00686 * 2 1 3 5 5 C 1.53003 * 109.47640 * 120.00338 * 2 1 3 6 6 H 1.08994 * 110.92552 * 301.40279 * 5 2 1 7 7 C 1.54780 * 111.01989 * 177.46050 * 5 2 1 8 8 N 1.47576 * 102.04933 * 218.06424 * 7 5 2 9 9 C 1.30626 * 108.34252 * 15.36404 * 8 7 5 10 10 C 1.41264 * 123.22354 * 180.48305 * 9 8 7 11 11 H 1.08002 * 119.99462 * 179.70794 * 10 9 8 12 12 C 1.40211 * 119.99896 * 359.70462 * 10 9 8 13 13 N 1.30596 * 120.00357 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99807 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46855 * 179.97438 * 14 12 10 16 16 H 1.48497 * 109.47173 * 300.00165 * 14 12 10 17 17 H 1.48498 * 109.46997 * 60.00311 * 14 12 10 18 18 O 1.35192 * 113.55284 * 0.21475 * 9 8 7 19 19 H 1.09007 * 109.46577 * 299.99066 * 1 2 3 20 20 H 1.08997 * 109.47567 * 59.99306 * 1 2 3 21 21 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47173 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47448 * 300.00767 * 3 2 1 24 24 H 1.08999 * 109.46616 * 60.00284 * 3 2 1 25 25 H 1.08999 * 109.47091 * 296.88865 * 4 2 1 26 26 H 1.08996 * 109.47530 * 56.88903 * 4 2 1 27 27 H 1.09001 * 109.47408 * 176.89442 * 4 2 1 28 28 H 1.09005 * 110.90571 * 336.48054 * 7 5 2 29 29 H 1.09004 * 110.90495 * 100.03724 * 7 5 2 30 30 H 0.97001 * 120.00460 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6698 -0.2408 2.1547 7 6 3.5860 -0.7978 1.2537 8 7 3.8263 -2.1418 1.8140 9 6 2.7084 -2.8153 1.7606 10 6 2.5815 -4.1428 2.2268 11 1 1.6299 -4.6494 2.1614 12 6 3.6910 -4.8026 2.7742 13 7 4.8415 -4.1898 2.8536 14 14 3.5234 -6.5583 3.3899 15 1 4.8309 -7.0247 3.9173 16 1 2.5066 -6.6087 4.4710 17 1 3.0998 -7.4371 2.2704 18 8 1.6829 -2.1183 1.2218 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.7228 -1.7636 -1.2220 26 1 1.6318 -0.2404 -2.1384 27 1 3.1285 -0.6732 -1.2777 28 1 3.9824 -0.7178 0.2414 29 1 4.0117 -0.0284 1.8979 30 1 5.6090 -4.6461 3.2327 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260118355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:41 Heat of formation + Delta-G solvation = -53.751449 kcal Electronic energy + Delta-G solvation = -12974.317556 eV Core-core repulsion = 10768.804228 eV Total energy + Delta-G solvation = -2205.513328 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.51468 -37.53150 -35.41337 -33.28186 -30.49894 -28.25307 -28.17049 -27.23985 -23.74207 -22.12216 -19.75083 -18.74323 -17.46790 -17.07268 -16.34457 -15.53694 -15.01110 -14.63592 -14.31504 -14.12666 -13.57997 -13.20012 -13.10088 -12.96661 -12.85483 -12.56502 -12.38352 -12.26840 -11.95127 -11.72769 -11.64896 -11.46489 -10.99229 -9.80153 -9.36324 -8.40108 -6.76693 1.42244 1.43168 1.57509 2.14412 2.25588 3.01860 3.33254 3.77779 3.81967 4.04623 4.13336 4.41944 4.51377 4.66434 4.76033 4.78028 4.86207 4.92603 4.98544 5.02591 5.04122 5.17297 5.22244 5.36978 5.46204 5.48514 5.88947 6.13437 6.73761 6.91336 8.09596 8.53345 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069345 B = 0.009667 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.678802 B = 2895.735444 C = 3093.552891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.134 4.134 5 C 0.057 3.943 6 H 0.061 0.939 7 C 0.005 3.995 8 N -0.644 5.644 9 C 0.354 3.646 10 C -0.489 4.489 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.775 5.775 14 Si 1.002 2.998 15 H -0.267 1.267 16 H -0.257 1.257 17 H -0.257 1.257 18 O -0.378 6.378 19 H 0.058 0.942 20 H 0.080 0.920 21 H 0.039 0.961 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 5.525 -4.044 8.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 C -0.189 4.189 4 C -0.191 4.191 5 C -0.001 4.001 6 H 0.079 0.921 7 C -0.125 4.125 8 N -0.391 5.391 9 C 0.154 3.846 10 C -0.527 4.527 11 H 0.104 0.896 12 C -0.190 4.190 13 N -0.401 5.401 14 Si 0.821 3.179 15 H -0.191 1.191 16 H -0.181 1.181 17 H -0.181 1.181 18 O -0.286 6.286 19 H 0.077 0.923 20 H 0.099 0.901 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.520 5.519 -3.870 8.116 hybrid contribution -0.391 -0.288 0.148 0.508 sum -4.911 5.232 -3.722 8.084 Atomic orbital electron populations 1.21773 0.92988 1.01416 1.02660 1.20629 0.97064 0.95935 0.92354 1.21793 1.01018 0.92815 1.03278 1.21797 1.00312 0.99644 0.97309 1.23988 0.96247 0.81184 0.98670 0.92101 1.23867 0.93122 0.96529 0.99010 1.76109 1.22636 1.03629 1.36716 1.22324 0.81614 0.93719 0.86985 1.19009 0.98747 0.95112 1.39859 0.89552 1.26867 0.93422 1.04627 0.94124 1.70131 1.01158 1.38516 1.30281 0.84984 0.78794 0.74864 0.79244 1.19074 1.18080 1.18148 1.86874 1.44726 1.18544 1.78473 0.92282 0.90080 0.94218 0.92950 0.89640 0.91867 0.94920 0.89884 0.93740 0.92617 0.92390 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.39 71.98 0.60 -3.15 16 2 C -0.06 -1.95 0.66 -52.18 -0.03 -1.98 16 3 C -0.13 -3.36 8.28 71.98 0.60 -2.77 16 4 C -0.13 -4.49 8.00 71.98 0.58 -3.91 16 5 C 0.06 2.51 2.95 31.20 0.09 2.60 16 6 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 7 C 0.01 0.26 6.49 86.78 0.56 0.82 16 8 N -0.64 -38.80 9.69 -456.24 -4.42 -43.22 16 9 C 0.35 21.19 7.43 85.62 0.64 21.83 16 10 C -0.49 -28.63 9.50 23.49 0.22 -28.41 16 11 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 12 C 0.03 1.62 5.50 85.36 0.47 2.09 16 13 N -0.78 -44.90 11.74 21.86 0.26 -44.65 16 14 Si 1.00 40.13 29.56 68.60 2.03 42.15 16 15 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 18 O -0.38 -20.10 9.71 -84.72 -0.82 -20.92 16 19 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 20 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.04 1.30 7.91 -2.39 -0.02 1.28 16 22 H 0.05 1.41 7.32 -2.39 -0.02 1.39 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.03 1.27 7.52 -2.39 -0.02 1.26 16 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.58 6.18 -2.39 -0.01 1.56 16 28 H 0.06 2.61 5.73 -2.38 -0.01 2.60 16 29 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.28 14.61 8.29 -92.71 -0.77 13.84 16 Total: -1.00 -68.43 247.01 1.88 -66.55 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.11 Total: 12.97 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 3.73 Total: -12.88 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -4.16 Total: -87.87 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.82 Total: -20.92 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Total: -68.43 1.88 -66.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.801 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds