Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47039 * 2 1 4 4 C 1.53000 * 109.47451 * 120.00037 * 2 1 3 5 5 C 1.53001 * 109.47436 * 175.00279 * 4 2 1 6 6 H 1.09002 * 110.89323 * 308.91460 * 5 4 2 7 7 C 1.54783 * 111.01894 * 185.00027 * 5 4 2 8 8 N 1.47583 * 102.10591 * 218.27238 * 7 5 4 9 9 C 1.30634 * 108.33772 * 14.98674 * 8 7 5 10 10 C 1.41262 * 123.22172 * 180.58771 * 9 8 7 11 11 H 1.07997 * 119.99608 * 186.59024 * 10 9 8 12 12 C 1.40219 * 120.00051 * 6.59396 * 10 9 8 13 13 N 1.30597 * 119.99583 * 6.67328 * 12 10 9 14 14 Si 1.86800 * 119.99829 * 186.40301 * 12 10 9 15 15 H 1.48496 * 109.47054 * 265.29408 * 14 12 10 16 16 H 1.48504 * 109.46982 * 25.29207 * 14 12 10 17 17 H 1.48496 * 109.47043 * 145.29139 * 14 12 10 18 18 O 1.35193 * 113.55268 * 0.86381 * 9 8 7 19 19 H 1.09000 * 109.46831 * 299.99760 * 1 2 3 20 20 H 1.08997 * 109.47166 * 59.99752 * 1 2 3 21 21 H 1.08996 * 109.46607 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47260 * 240.00541 * 2 1 3 23 23 H 1.08997 * 109.47076 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.46843 * 300.00308 * 3 2 1 25 25 H 1.09001 * 109.47333 * 59.99911 * 3 2 1 26 26 H 1.09001 * 109.47063 * 55.00130 * 4 2 1 27 27 H 1.08999 * 109.47022 * 295.00079 * 4 2 1 28 28 H 1.08999 * 110.90479 * 100.07187 * 7 5 4 29 29 H 1.08997 * 110.93358 * 336.49102 * 7 5 4 30 30 H 0.97004 * 119.99200 * 179.72538 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1880 6 1 3.8865 -1.2503 0.2346 7 6 4.1096 -1.6644 2.3731 8 7 5.3481 -0.9396 2.7179 9 6 5.3129 0.2318 2.1408 10 6 6.3527 1.1814 2.2530 11 1 6.2251 2.1727 1.8440 12 6 7.5506 0.8368 2.8954 13 7 7.7572 -0.3959 3.2739 14 14 8.8537 2.1394 3.2027 15 1 9.8459 2.1173 2.0981 16 1 8.2116 3.4770 3.2647 17 1 9.5395 1.8594 4.4898 18 8 4.1834 0.4506 1.4308 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5137 -0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 1.6055 -1.7198 1.2951 27 1 1.7517 -0.1583 2.1369 28 1 4.3304 -2.6854 2.0615 29 1 3.4094 -1.6575 3.2084 30 1 8.5876 -0.6350 3.7148 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260127551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = -37.234933 kcal Electronic energy + Delta-G solvation = -12714.340611 eV Core-core repulsion = 10509.543493 eV Total energy + Delta-G solvation = -2204.797118 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.36463 -35.86881 -33.42613 -31.38459 -29.95378 -26.91304 -26.75860 -24.00803 -20.91114 -20.07677 -19.57229 -16.75725 -15.46355 -15.26817 -14.83730 -13.98505 -13.47404 -13.33541 -12.73915 -12.25342 -11.98665 -11.81597 -11.52475 -11.25393 -11.22257 -11.13960 -10.64093 -10.45270 -10.40801 -10.26262 -9.96291 -9.78477 -9.05238 -7.73695 -7.31558 -6.40811 -4.57621 3.09749 3.18441 3.23372 4.03485 4.18586 4.83209 5.05502 5.23160 5.30678 5.47444 5.76958 5.81907 5.93562 5.96725 6.03629 6.05616 6.17362 6.39983 6.43074 6.46593 6.63467 6.69592 6.89052 6.95830 7.03241 7.39646 7.86553 8.26989 8.84706 9.04396 10.17086 10.53398 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.062976 B = 0.009051 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.505064 B = 3092.719295 C = 3467.211765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.104 4.104 5 C 0.049 3.951 6 H 0.064 0.936 7 C 0.007 3.993 8 N -0.604 5.604 9 C 0.375 3.625 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.080 3.920 13 N -0.738 5.738 14 Si 0.915 3.085 15 H -0.272 1.272 16 H -0.262 1.262 17 H -0.277 1.277 18 O -0.363 6.363 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 1.082 -4.309 8.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.142 4.142 5 C -0.009 4.009 6 H 0.082 0.918 7 C -0.124 4.124 8 N -0.350 5.350 9 C 0.175 3.825 10 C -0.494 4.494 11 H 0.100 0.900 12 C -0.144 4.144 13 N -0.363 5.363 14 Si 0.739 3.261 15 H -0.197 1.197 16 H -0.186 1.186 17 H -0.202 1.202 18 O -0.271 6.271 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.126 0.544 -3.766 8.079 hybrid contribution -0.074 0.557 -0.311 0.642 sum -7.201 1.100 -4.077 8.348 Atomic orbital electron populations 1.21844 0.95925 1.01081 1.01376 1.21109 0.94779 0.97415 0.98025 1.21925 1.03699 0.94764 1.00135 1.21711 0.93865 1.00201 0.98378 1.23766 0.92650 0.85139 0.99387 0.91813 1.23788 0.95616 0.99083 0.93929 1.76177 1.16110 1.07539 1.35133 1.22028 0.82910 0.92387 0.85199 1.18518 0.96038 0.98086 1.36768 0.89958 1.25726 0.98690 0.95818 0.94128 1.69994 1.22985 1.17421 1.25911 0.86209 0.80196 0.81390 0.78285 1.19702 1.18597 1.20218 1.86988 1.38073 1.30060 1.72012 0.92887 0.93087 0.93152 0.91759 0.89968 0.94122 0.93201 0.91342 0.91442 0.92764 0.93904 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.09 -1.42 2.92 -90.62 -0.26 -1.69 16 3 C -0.15 -2.41 8.63 37.16 0.32 -2.09 16 4 C -0.10 -1.77 4.48 -26.73 -0.12 -1.89 16 5 C 0.05 1.06 3.54 -25.79 -0.09 0.97 16 6 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 7 C 0.01 0.16 7.67 -2.51 -0.02 0.15 16 8 N -0.60 -17.69 9.78 -59.54 -0.58 -18.28 16 9 C 0.38 10.83 7.40 -16.91 -0.13 10.70 16 10 C -0.46 -12.97 9.50 -37.69 -0.36 -13.33 16 11 H 0.08 2.21 7.86 -52.49 -0.41 1.79 16 12 C 0.08 2.16 5.49 -17.33 -0.10 2.07 16 13 N -0.74 -21.01 11.81 55.56 0.66 -20.36 16 14 Si 0.92 19.60 29.57 -169.99 -5.03 14.58 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 O -0.36 -9.19 8.15 -17.27 -0.14 -9.33 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 1.59 5.67 -51.93 -0.29 1.29 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 LS Contribution 250.59 15.07 3.78 3.78 Total: -1.00 -30.71 250.59 -6.21 -36.92 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.48 Total: -0.76 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.41 Total: -6.54 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.07 Total: -38.63 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.14 Total: -9.33 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.71 -6.21 -36.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.319 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds