Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47039 * 2 1 4 4 C 1.53000 * 109.47451 * 120.00037 * 2 1 3 5 5 C 1.53001 * 109.47436 * 175.00279 * 4 2 1 6 6 H 1.09002 * 110.89323 * 308.91460 * 5 4 2 7 7 C 1.54783 * 111.01894 * 185.00027 * 5 4 2 8 8 N 1.47583 * 102.10591 * 218.27238 * 7 5 4 9 9 C 1.30634 * 108.33772 * 14.98674 * 8 7 5 10 10 C 1.41262 * 123.22172 * 180.58771 * 9 8 7 11 11 H 1.07997 * 119.99608 * 186.59024 * 10 9 8 12 12 C 1.40219 * 120.00051 * 6.59396 * 10 9 8 13 13 N 1.30597 * 119.99583 * 6.67328 * 12 10 9 14 14 Si 1.86800 * 119.99829 * 186.40301 * 12 10 9 15 15 H 1.48496 * 109.47054 * 265.29408 * 14 12 10 16 16 H 1.48504 * 109.46982 * 25.29207 * 14 12 10 17 17 H 1.48496 * 109.47043 * 145.29139 * 14 12 10 18 18 O 1.35193 * 113.55268 * 0.86381 * 9 8 7 19 19 H 1.09000 * 109.46831 * 299.99760 * 1 2 3 20 20 H 1.08997 * 109.47166 * 59.99752 * 1 2 3 21 21 H 1.08996 * 109.46607 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47260 * 240.00541 * 2 1 3 23 23 H 1.08997 * 109.47076 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.46843 * 300.00308 * 3 2 1 25 25 H 1.09001 * 109.47333 * 59.99911 * 3 2 1 26 26 H 1.09001 * 109.47063 * 55.00130 * 4 2 1 27 27 H 1.08999 * 109.47022 * 295.00079 * 4 2 1 28 28 H 1.08999 * 110.90479 * 100.07187 * 7 5 4 29 29 H 1.08997 * 110.93358 * 336.49102 * 7 5 4 30 30 H 0.97004 * 119.99200 * 179.72538 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1880 6 1 3.8865 -1.2503 0.2346 7 6 4.1096 -1.6644 2.3731 8 7 5.3481 -0.9396 2.7179 9 6 5.3129 0.2318 2.1408 10 6 6.3527 1.1814 2.2530 11 1 6.2251 2.1727 1.8440 12 6 7.5506 0.8368 2.8954 13 7 7.7572 -0.3959 3.2739 14 14 8.8537 2.1394 3.2027 15 1 9.8459 2.1173 2.0981 16 1 8.2116 3.4770 3.2647 17 1 9.5395 1.8594 4.4898 18 8 4.1834 0.4506 1.4308 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5137 -0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 1.6055 -1.7198 1.2951 27 1 1.7517 -0.1583 2.1369 28 1 4.3304 -2.6854 2.0615 29 1 3.4094 -1.6575 3.2084 30 1 8.5876 -0.6350 3.7148 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260127551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = -59.336133 kcal Electronic energy + Delta-G solvation = -12715.298991 eV Core-core repulsion = 10509.543493 eV Total energy + Delta-G solvation = -2205.755498 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.28134 -37.22888 -35.44693 -33.37696 -31.71600 -28.77652 -27.93473 -25.79718 -22.75061 -21.94008 -20.96029 -18.79519 -17.29268 -17.20717 -16.34976 -15.63824 -15.07767 -14.59634 -14.37180 -14.04940 -13.68294 -13.27734 -13.04443 -12.94476 -12.83525 -12.57758 -12.35667 -12.23748 -11.88659 -11.66115 -11.53019 -11.31229 -11.00836 -9.80078 -9.39096 -8.43983 -6.75473 1.39845 1.43623 1.60292 2.12471 2.26673 3.02964 3.35950 3.74057 3.95548 4.06258 4.16652 4.30789 4.51035 4.69098 4.75086 4.77650 4.86338 4.90130 4.98363 5.08322 5.14436 5.19848 5.30158 5.35643 5.49375 5.57478 5.91534 6.14618 6.74629 6.91379 8.08719 8.52690 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.062976 B = 0.009051 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.505064 B = 3092.719295 C = 3467.211765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.095 4.095 5 C 0.050 3.950 6 H 0.066 0.934 7 C 0.002 3.998 8 N -0.649 5.649 9 C 0.355 3.645 10 C -0.492 4.492 11 H 0.087 0.913 12 C 0.033 3.967 13 N -0.780 5.780 14 Si 1.001 2.999 15 H -0.259 1.259 16 H -0.255 1.255 17 H -0.267 1.267 18 O -0.369 6.369 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 1.664 -4.844 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.008 4.008 6 H 0.084 0.916 7 C -0.129 4.129 8 N -0.396 5.396 9 C 0.154 3.846 10 C -0.529 4.529 11 H 0.105 0.895 12 C -0.187 4.187 13 N -0.405 5.405 14 Si 0.820 3.180 15 H -0.183 1.183 16 H -0.178 1.178 17 H -0.192 1.192 18 O -0.277 6.277 19 H 0.071 0.929 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.742 1.114 -4.318 8.934 hybrid contribution 0.054 0.304 -0.170 0.353 sum -7.687 1.418 -4.488 9.014 Atomic orbital electron populations 1.21777 0.93164 1.02424 1.02176 1.21113 0.97002 0.96026 0.97006 1.21883 1.01291 0.96230 1.00936 1.21719 0.90326 1.02057 0.99164 1.23990 0.95378 0.83167 0.98259 0.91567 1.23836 0.94426 0.99391 0.95258 1.76072 1.18957 1.08404 1.36197 1.22354 0.83930 0.92652 0.85664 1.19027 0.97218 0.98544 1.38143 0.89465 1.26860 1.00675 0.98387 0.92824 1.70100 1.24213 1.19902 1.26311 0.84932 0.76537 0.77822 0.78680 1.18333 1.17800 1.19162 1.87002 1.37306 1.31930 1.71509 0.92885 0.91557 0.91568 0.91147 0.93514 0.91867 0.93875 0.88551 0.92463 0.91905 0.93285 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 2 C -0.09 -2.59 2.92 -10.79 -0.03 -2.62 16 3 C -0.15 -4.61 8.63 71.98 0.62 -3.99 16 4 C -0.10 -3.09 4.48 30.59 0.14 -2.96 16 5 C 0.05 2.16 3.54 31.20 0.11 2.27 16 6 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 7 C 0.00 0.08 7.67 86.78 0.67 0.75 16 8 N -0.65 -39.05 9.78 -456.22 -4.46 -43.51 16 9 C 0.35 21.04 7.40 85.61 0.63 21.67 16 10 C -0.49 -28.57 9.50 23.50 0.22 -28.35 16 11 H 0.09 4.77 7.86 -2.91 -0.02 4.75 16 12 C 0.03 1.77 5.49 85.36 0.47 2.24 16 13 N -0.78 -45.10 11.81 21.87 0.26 -44.84 16 14 Si 1.00 40.01 29.57 68.60 2.03 42.03 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 17 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 18 O -0.37 -19.13 8.15 -84.73 -0.69 -19.82 16 19 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.81 5.67 -2.39 -0.01 1.80 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 2.60 8.14 -2.39 -0.02 2.59 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.05 2.27 7.91 -2.39 -0.02 2.25 16 30 H 0.28 14.58 8.29 -92.71 -0.77 13.81 16 Total: -1.00 -67.53 250.59 1.73 -65.81 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.10 Total: 13.58 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 3.49 Total: -13.25 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.20 Total: -88.35 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.69 Total: -19.82 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -67.53 1.73 -65.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.471 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds