Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35030 * 1 3 3 C 1.40076 * 119.99398 * 2 1 4 4 H 1.07999 * 119.99866 * 153.50555 * 3 2 1 5 5 C 1.40309 * 120.00248 * 333.22940 * 3 2 1 6 6 N 1.30686 * 120.00008 * 345.44670 * 5 3 2 7 7 Si 1.86802 * 119.99967 * 165.44366 * 5 3 2 8 8 H 1.48497 * 109.47199 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46964 * 120.00535 * 7 5 3 10 10 H 1.48497 * 109.46986 * 240.00306 * 7 5 3 11 11 C 1.50697 * 120.00366 * 180.02562 * 2 1 3 12 12 N 1.46897 * 109.47323 * 95.00062 * 11 2 1 13 13 C 1.47009 * 110.99844 * 293.63692 * 12 11 2 14 14 C 1.53098 * 109.26103 * 177.60969 * 13 12 11 15 15 O 1.43013 * 109.26151 * 56.84261 * 14 13 12 16 16 C 1.43016 * 113.73861 * 301.33546 * 15 14 13 17 17 C 1.47015 * 111.00160 * 169.99902 * 12 11 2 18 18 H 1.08009 * 119.99504 * 174.61421 * 1 2 3 19 19 H 1.07999 * 120.00493 * 354.61489 * 1 2 3 20 20 H 0.96998 * 120.00592 * 179.97438 * 6 5 3 21 21 H 1.09002 * 109.46858 * 215.00150 * 11 2 1 22 22 H 1.08998 * 109.47008 * 334.99712 * 11 2 1 23 23 H 1.08999 * 109.50603 * 297.53974 * 13 12 11 24 24 H 1.08998 * 109.51217 * 57.67276 * 13 12 11 25 25 H 1.09007 * 109.50172 * 296.91243 * 14 13 12 26 26 H 1.08996 * 109.54784 * 176.80804 * 14 13 12 27 27 H 1.09006 * 109.50602 * 298.73493 * 16 15 14 28 28 H 1.08997 * 109.54434 * 178.62488 * 16 15 14 29 29 H 1.08999 * 109.50523 * 302.32761 * 17 12 11 30 30 H 1.08999 * 109.50400 * 62.41353 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2132 0.0000 4 1 3.0455 1.2624 0.4173 5 6 1.4617 2.3631 -0.5473 6 7 0.4006 2.2575 -1.3028 7 14 2.1945 4.0451 -0.1959 8 1 3.3838 3.8937 0.6803 9 1 2.5983 4.6857 -1.4733 10 1 1.1833 4.8931 0.4851 11 6 2.1039 -1.3050 -0.0006 12 7 2.4533 -1.6681 -1.3804 13 6 1.2483 -1.9673 -2.1677 14 6 1.6528 -2.2816 -3.6104 15 8 2.5847 -3.3665 -3.6134 16 6 3.7705 -3.1089 -2.8565 17 6 3.3875 -2.8030 -1.4061 18 1 -0.5400 -0.9313 -0.0878 19 1 -0.5401 0.9311 0.0878 20 1 -0.0067 3.0525 -1.6809 21 1 3.0145 -1.1989 0.5889 22 1 1.4790 -2.0856 0.4334 23 1 0.7369 -2.8283 -1.7373 24 1 0.5825 -1.1044 -2.1562 25 1 2.1163 -1.4025 -4.0582 26 1 0.7690 -2.5594 -4.1847 27 1 4.2956 -2.2538 -3.2824 28 1 4.4186 -3.9848 -2.8848 29 1 4.2831 -2.5501 -0.8387 30 1 2.9105 -3.6771 -0.9629 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260140830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = -24.298857 kcal Electronic energy + Delta-G solvation = -12891.618847 eV Core-core repulsion = 10687.382679 eV Total energy + Delta-G solvation = -2204.236168 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00125 -35.86324 -33.82252 -30.95882 -30.46010 -27.13058 -25.03059 -23.50190 -23.15939 -19.83157 -18.87697 -16.07082 -15.81481 -15.45469 -14.87159 -14.58486 -14.40626 -13.88090 -13.30593 -12.90514 -12.14443 -12.02521 -11.47949 -11.09275 -10.94636 -10.88803 -10.72605 -10.24577 -10.16600 -9.63287 -9.40775 -9.11114 -8.86728 -7.65263 -7.16983 -6.34238 -4.00338 3.12407 3.25224 3.30147 3.97109 4.20990 4.23354 4.70696 5.32622 5.46419 5.51030 5.59886 5.64929 5.76615 5.95900 6.05627 6.17980 6.26361 6.42269 6.50595 6.73236 6.87243 7.42997 7.47439 7.62950 7.74434 7.84501 8.28051 8.53828 9.05734 9.32385 9.50650 10.64903 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047304 B = 0.009961 C = 0.009895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.779343 B = 2810.426930 C = 2829.055917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.341 4.341 2 C 0.036 3.964 3 C -0.456 4.456 4 H 0.059 0.941 5 C 0.075 3.925 6 N -0.805 5.805 7 Si 0.894 3.106 8 H -0.266 1.266 9 H -0.280 1.280 10 H -0.278 1.278 11 C 0.098 3.902 12 N -0.518 5.518 13 C 0.021 3.979 14 C 0.065 3.935 15 O -0.395 6.395 16 C 0.066 3.934 17 C 0.016 3.984 18 H 0.036 0.964 19 H 0.091 0.909 20 H 0.268 0.732 21 H 0.060 0.940 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -6.164 -2.387 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.383 4.383 2 C 0.034 3.966 3 C -0.488 4.488 4 H 0.078 0.922 5 C -0.139 4.139 6 N -0.433 5.433 7 Si 0.720 3.280 8 H -0.190 1.190 9 H -0.206 1.206 10 H -0.204 1.204 11 C -0.029 4.029 12 N -0.243 5.243 13 C -0.107 4.107 14 C -0.012 4.012 15 O -0.314 6.314 16 C -0.011 4.011 17 C -0.113 4.113 18 H 0.055 0.945 19 H 0.109 0.891 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.127 0.873 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.118 -5.810 -2.838 7.666 hybrid contribution -0.068 0.436 0.617 0.758 sum 4.050 -5.374 -2.222 7.086 Atomic orbital electron populations 1.23341 0.94563 0.97363 1.23010 1.18226 0.92864 0.90452 0.95061 1.19027 1.01211 0.93183 1.35381 0.92248 1.25686 0.94690 1.00186 0.93328 1.69820 1.19224 1.29846 1.24421 0.86506 0.79754 0.82999 0.78698 1.18965 1.20568 1.20389 1.21242 0.98255 0.96625 0.86743 1.62133 1.13855 1.34311 1.14015 1.22791 0.93342 1.01360 0.93199 1.22701 0.92345 0.89629 0.96511 1.87882 1.30396 1.41079 1.72072 1.22596 0.87219 1.00790 0.90473 1.22764 0.97969 0.93098 0.97435 0.94536 0.89073 0.92124 0.92141 0.96806 0.95571 0.87280 0.92298 0.89098 0.92483 0.89311 0.90309 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.28 11.49 29.59 0.34 -8.94 16 2 C 0.04 0.96 4.57 -105.07 -0.48 0.47 16 3 C -0.46 -12.68 9.04 -38.11 -0.34 -13.03 16 4 H 0.06 1.62 7.89 -52.49 -0.41 1.20 16 5 C 0.07 2.03 5.13 -17.26 -0.09 1.94 16 6 N -0.81 -22.42 10.99 55.57 0.61 -21.81 16 7 Si 0.89 20.27 29.59 -169.99 -5.03 15.24 16 8 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.10 2.22 5.10 -4.98 -0.03 2.20 16 12 N -0.52 -10.95 4.72 -235.76 -1.11 -12.06 16 13 C 0.02 0.43 5.33 -3.71 -0.02 0.41 16 14 C 0.06 1.14 7.01 37.21 0.26 1.40 16 15 O -0.40 -6.89 10.83 -35.23 -0.38 -7.27 16 16 C 0.07 1.02 7.01 37.21 0.26 1.28 16 17 C 0.02 0.27 5.65 -3.71 -0.02 0.25 16 18 H 0.04 0.94 8.06 -52.48 -0.42 0.52 16 19 H 0.09 2.68 6.28 -52.49 -0.33 2.35 16 20 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 21 H 0.06 1.31 8.02 -51.93 -0.42 0.89 16 22 H 0.01 0.30 8.02 -51.93 -0.42 -0.11 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.11 2.56 6.29 -51.93 -0.33 2.23 16 25 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 247.55 15.07 3.73 3.73 Total: -1.00 -29.28 247.55 -6.72 -36.00 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.42 Total: 0.17 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.12 Total: -14.00 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: -0.50 Total: -33.87 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.38 Total: -7.27 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.28 -6.72 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.702 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds