Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35030 * 1 3 3 C 1.40076 * 119.99398 * 2 1 4 4 H 1.07999 * 119.99866 * 153.50555 * 3 2 1 5 5 C 1.40309 * 120.00248 * 333.22940 * 3 2 1 6 6 N 1.30686 * 120.00008 * 345.44670 * 5 3 2 7 7 Si 1.86802 * 119.99967 * 165.44366 * 5 3 2 8 8 H 1.48497 * 109.47199 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46964 * 120.00535 * 7 5 3 10 10 H 1.48497 * 109.46986 * 240.00306 * 7 5 3 11 11 C 1.50697 * 120.00366 * 180.02562 * 2 1 3 12 12 N 1.46897 * 109.47323 * 95.00062 * 11 2 1 13 13 C 1.47009 * 110.99844 * 293.63692 * 12 11 2 14 14 C 1.53098 * 109.26103 * 177.60969 * 13 12 11 15 15 O 1.43013 * 109.26151 * 56.84261 * 14 13 12 16 16 C 1.43016 * 113.73861 * 301.33546 * 15 14 13 17 17 C 1.47015 * 111.00160 * 169.99902 * 12 11 2 18 18 H 1.08009 * 119.99504 * 174.61421 * 1 2 3 19 19 H 1.07999 * 120.00493 * 354.61489 * 1 2 3 20 20 H 0.96998 * 120.00592 * 179.97438 * 6 5 3 21 21 H 1.09002 * 109.46858 * 215.00150 * 11 2 1 22 22 H 1.08998 * 109.47008 * 334.99712 * 11 2 1 23 23 H 1.08999 * 109.50603 * 297.53974 * 13 12 11 24 24 H 1.08998 * 109.51217 * 57.67276 * 13 12 11 25 25 H 1.09007 * 109.50172 * 296.91243 * 14 13 12 26 26 H 1.08996 * 109.54784 * 176.80804 * 14 13 12 27 27 H 1.09006 * 109.50602 * 298.73493 * 16 15 14 28 28 H 1.08997 * 109.54434 * 178.62488 * 16 15 14 29 29 H 1.08999 * 109.50523 * 302.32761 * 17 12 11 30 30 H 1.08999 * 109.50400 * 62.41353 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2132 0.0000 4 1 3.0455 1.2624 0.4173 5 6 1.4617 2.3631 -0.5473 6 7 0.4006 2.2575 -1.3028 7 14 2.1945 4.0451 -0.1959 8 1 3.3838 3.8937 0.6803 9 1 2.5983 4.6857 -1.4733 10 1 1.1833 4.8931 0.4851 11 6 2.1039 -1.3050 -0.0006 12 7 2.4533 -1.6681 -1.3804 13 6 1.2483 -1.9673 -2.1677 14 6 1.6528 -2.2816 -3.6104 15 8 2.5847 -3.3665 -3.6134 16 6 3.7705 -3.1089 -2.8565 17 6 3.3875 -2.8030 -1.4061 18 1 -0.5400 -0.9313 -0.0878 19 1 -0.5401 0.9311 0.0878 20 1 -0.0067 3.0525 -1.6809 21 1 3.0145 -1.1989 0.5889 22 1 1.4790 -2.0856 0.4334 23 1 0.7369 -2.8283 -1.7373 24 1 0.5825 -1.1044 -2.1562 25 1 2.1163 -1.4025 -4.0582 26 1 0.7690 -2.5594 -4.1847 27 1 4.2956 -2.2538 -3.2824 28 1 4.4186 -3.9848 -2.8848 29 1 4.2831 -2.5501 -0.8387 30 1 2.9105 -3.6771 -0.9629 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260140830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = -44.593670 kcal Electronic energy + Delta-G solvation = -12892.498896 eV Core-core repulsion = 10687.382679 eV Total energy + Delta-G solvation = -2205.116217 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.46143 -37.58610 -35.70114 -32.77985 -32.01002 -28.78228 -27.13230 -25.07550 -24.71802 -21.30770 -20.92449 -17.84151 -17.40701 -17.07289 -16.72340 -16.01406 -15.91075 -15.49323 -14.99127 -14.65721 -14.08021 -13.67070 -13.16835 -12.80432 -12.60328 -12.45320 -12.31977 -12.16836 -11.69715 -11.44100 -11.36405 -10.93058 -10.61377 -9.46155 -9.09341 -8.40659 -6.17174 1.31384 1.40598 1.53964 2.02182 2.31392 2.86427 3.03554 3.54254 3.98111 4.11558 4.16480 4.22771 4.31805 4.55078 4.64899 4.68682 4.75488 4.88151 4.93843 4.99967 5.07680 5.30633 5.51032 6.03708 6.10238 6.14036 6.27721 6.37766 6.93894 7.19899 7.42570 8.59544 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047304 B = 0.009961 C = 0.009895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.779343 B = 2810.426930 C = 2829.055917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.359 4.359 2 C 0.033 3.967 3 C -0.488 4.488 4 H 0.060 0.940 5 C 0.030 3.970 6 N -0.833 5.833 7 Si 0.970 3.030 8 H -0.259 1.259 9 H -0.271 1.271 10 H -0.272 1.272 11 C 0.104 3.896 12 N -0.537 5.537 13 C 0.026 3.974 14 C 0.073 3.927 15 O -0.399 6.399 16 C 0.065 3.935 17 C 0.015 3.985 18 H 0.041 0.959 19 H 0.064 0.936 20 H 0.275 0.725 21 H 0.070 0.930 22 H 0.016 0.984 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -6.352 -2.735 8.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.401 4.401 2 C 0.031 3.969 3 C -0.519 4.519 4 H 0.078 0.922 5 C -0.182 4.182 6 N -0.461 5.461 7 Si 0.792 3.208 8 H -0.183 1.183 9 H -0.196 1.196 10 H -0.197 1.197 11 C -0.023 4.023 12 N -0.262 5.262 13 C -0.103 4.103 14 C -0.003 4.003 15 O -0.318 6.318 16 C -0.011 4.011 17 C -0.113 4.113 18 H 0.059 0.941 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.034 0.966 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.655 -6.020 -3.188 8.854 hybrid contribution -0.533 0.475 0.712 1.008 sum 5.121 -5.546 -2.477 7.945 Atomic orbital electron populations 1.23095 0.95005 0.96244 1.25737 1.18587 0.92924 0.92252 0.93145 1.19348 1.01627 0.94461 1.36509 0.92171 1.26598 0.94983 1.04123 0.92534 1.69916 1.20241 1.31381 1.24552 0.85358 0.79067 0.77564 0.78802 1.18258 1.19644 1.19727 1.21067 0.98148 0.94764 0.88278 1.62055 1.14537 1.36846 1.12768 1.22677 0.92835 0.99624 0.95135 1.22632 0.93394 0.89712 0.94609 1.87886 1.30879 1.40752 1.72297 1.22816 0.86871 1.02602 0.88860 1.22905 0.97478 0.91722 0.99149 0.94070 0.91776 0.91473 0.91157 0.96568 0.95528 0.91033 0.93102 0.86798 0.92595 0.85480 0.88673 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -20.22 11.49 67.08 0.77 -19.45 16 2 C 0.03 1.78 4.57 -20.16 -0.09 1.69 16 3 C -0.49 -27.32 9.04 23.22 0.21 -27.11 16 4 H 0.06 3.27 7.89 -2.91 -0.02 3.24 16 5 C 0.03 1.61 5.13 85.37 0.44 2.04 16 6 N -0.83 -47.06 10.99 21.89 0.24 -46.82 16 7 Si 0.97 41.31 29.59 68.60 2.03 43.34 16 8 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 C 0.10 4.72 5.10 85.56 0.44 5.15 16 12 N -0.54 -22.25 4.72 -899.81 -4.24 -26.49 16 13 C 0.03 1.04 5.33 86.32 0.46 1.51 16 14 C 0.07 2.49 7.01 72.01 0.50 3.00 16 15 O -0.40 -12.90 10.83 -148.98 -1.61 -14.51 16 16 C 0.07 1.81 7.01 72.02 0.50 2.31 16 17 C 0.02 0.49 5.65 86.31 0.49 0.97 16 18 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 19 H 0.06 3.92 6.28 -2.91 -0.02 3.90 16 20 H 0.27 14.26 8.29 -92.71 -0.77 13.49 16 21 H 0.07 2.98 8.02 -2.39 -0.02 2.96 16 22 H 0.02 0.71 8.02 -2.39 -0.02 0.69 16 23 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 3.46 6.29 -2.39 -0.02 3.44 16 25 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.09 2.70 8.09 -2.39 -0.02 2.68 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -62.61 247.55 1.23 -61.38 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.10 Total: 12.98 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.72 Total: -29.88 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -4.00 Total: -73.31 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.61 Total: -14.51 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -62.61 1.23 -61.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.783 kcal (2) G-P(sol) polarization free energy of solvation -62.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds