Wall clock time and date at job start Mon Mar 30 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99578 * 2 1 4 4 N 1.34775 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.64595 * 0.05354 * 4 2 1 6 6 C 1.54330 * 107.26866 * 181.01194 * 5 4 2 7 7 C 1.55157 * 102.94049 * 22.19588 * 6 5 4 8 8 H 1.09002 * 111.00633 * 82.57450 * 7 6 5 9 9 C 1.52998 * 110.99964 * 206.38246 * 7 6 5 10 10 C 1.50698 * 109.47065 * 184.99985 * 9 7 6 11 11 H 1.08001 * 119.99884 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00238 * 180.02562 * 10 9 7 13 13 N 1.31509 * 120.00118 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47002 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46998 * 120.00131 * 14 12 10 17 17 H 1.48499 * 109.47366 * 240.00174 * 14 12 10 18 18 C 1.47426 * 125.65028 * 180.02562 * 4 2 1 19 19 H 1.08998 * 109.46872 * 239.99884 * 1 2 3 20 20 H 1.08996 * 109.47662 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46950 * 120.00592 * 1 2 3 22 22 H 1.09000 * 109.88042 * 61.59824 * 5 4 2 23 23 H 1.08996 * 109.88551 * 300.42965 * 5 4 2 24 24 H 1.08996 * 110.71860 * 263.82642 * 6 5 4 25 25 H 1.09002 * 110.71679 * 140.55640 * 6 5 4 26 26 H 1.09003 * 109.47579 * 304.99655 * 9 7 6 27 27 H 1.08997 * 109.47283 * 65.00293 * 9 7 6 28 28 H 0.96999 * 120.00172 * 179.97438 * 13 12 10 29 29 H 1.09004 * 110.36498 * 37.07621 * 18 4 2 30 30 H 1.09000 * 110.45813 * 274.80371 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5747 -2.5065 0.0000 6 6 2.7282 -3.5315 0.0269 7 6 3.9081 -2.7114 0.6123 8 1 3.8585 -2.6774 1.7006 9 6 5.2520 -3.2739 0.1449 10 6 6.3719 -2.5323 0.8281 11 1 6.1476 -1.7387 1.5255 12 6 7.6830 -2.8660 0.5620 13 7 7.9562 -3.8319 -0.2876 14 14 9.0712 -1.9461 1.4083 15 1 8.5024 -0.9134 2.3112 16 1 9.8868 -2.9011 2.2009 17 1 9.9278 -1.2931 0.3861 18 6 3.6480 -1.3122 0.0011 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3633 -0.5140 -0.8900 22 1 0.9785 -2.6432 -0.9021 23 1 0.9482 -2.6303 0.8833 24 1 2.9608 -3.8769 -0.9803 25 1 2.4826 -4.3715 0.6767 26 1 5.3104 -4.3327 0.3974 27 1 5.3412 -3.1524 -0.9346 28 1 8.8785 -4.0665 -0.4750 29 1 4.1055 -0.5380 0.6172 30 1 4.0360 -1.2648 -1.0164 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:10 Heat of formation + Delta-G solvation = -53.427111 kcal Electronic energy + Delta-G solvation = -12496.283910 eV Core-core repulsion = 10290.784647 eV Total energy + Delta-G solvation = -2205.499264 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.61324 -37.17256 -33.50071 -31.80668 -29.61576 -29.24136 -26.27073 -23.58133 -22.06868 -19.47642 -18.96278 -16.76043 -16.32064 -15.80772 -15.06186 -14.48231 -14.09910 -13.29982 -12.84506 -12.64935 -12.38908 -12.28619 -11.83494 -11.68692 -11.46592 -11.27144 -10.83903 -10.48541 -10.26237 -9.94562 -9.62575 -9.32627 -9.03591 -8.38497 -8.29394 -6.02487 -4.04728 2.87680 3.31539 3.35755 3.39552 3.44630 4.45546 4.77042 5.01970 5.21257 5.22129 5.33496 5.41306 5.44716 5.62235 5.79465 5.88287 6.08825 6.26005 6.37275 6.51414 6.62884 6.81349 6.99830 7.59986 7.70696 7.87610 7.96166 8.37388 8.42793 9.01634 9.60189 11.08664 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050605 B = 0.008482 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.174916 B = 3300.255428 C = 3724.067763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.518 3.482 3 O -0.554 6.554 4 N -0.619 5.619 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.088 4.088 8 H 0.071 0.929 9 C 0.032 3.968 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.116 3.884 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.023 0.977 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.075 0.925 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 0.847 0.331 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.307 3.693 3 O -0.433 6.433 4 N -0.354 5.354 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.108 4.108 8 H 0.090 0.910 9 C -0.005 4.005 10 C -0.558 4.558 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.005 4.005 19 H 0.102 0.898 20 H 0.106 0.894 21 H 0.102 0.898 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.240 1.392 0.250 13.315 hybrid contribution 0.811 0.325 0.391 0.957 sum -12.429 1.716 0.640 12.563 Atomic orbital electron populations 1.21877 0.92173 1.04843 1.03833 1.20405 0.90153 0.82407 0.76347 1.90710 1.70930 1.30781 1.50879 1.48778 1.08869 1.05465 1.72259 1.22044 0.96741 0.82666 1.00650 1.22775 0.94807 0.97142 1.02363 1.22507 0.96521 0.92296 0.99446 0.91041 1.19070 0.88468 0.96261 0.96689 1.21277 0.90929 1.18326 1.25310 0.92534 1.25001 0.98956 0.95150 0.95219 1.69960 1.19160 1.29621 1.34742 0.86560 0.82272 0.79848 0.79517 1.19679 1.21030 1.20985 1.22372 0.77755 0.98921 1.01448 0.89764 0.89373 0.89787 0.92004 0.91929 0.90662 0.90579 0.95914 0.96150 0.93023 0.90629 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.51 36.00 0.34 -1.44 16 2 C 0.52 8.57 7.96 -10.99 -0.09 8.48 16 3 O -0.55 -11.69 17.34 5.55 0.10 -11.59 16 4 N -0.62 -10.25 3.33 -170.54 -0.57 -10.81 16 5 C 0.10 1.32 6.49 -3.06 -0.02 1.30 16 6 C -0.13 -2.00 6.42 -24.89 -0.16 -2.16 16 7 C -0.09 -1.73 2.95 -88.49 -0.26 -1.99 16 8 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 9 C 0.03 0.80 4.49 -27.89 -0.13 0.67 16 10 C -0.52 -14.39 8.86 -34.44 -0.31 -14.70 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 C 0.12 2.30 6.13 -2.54 -0.02 2.28 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 20 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.53 7.96 -51.93 -0.41 0.12 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 30 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 LS Contribution 256.18 15.07 3.86 3.86 Total: -1.00 -32.05 256.18 -6.20 -38.25 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -4.58 Total: -4.63 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.73 Total: -6.00 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.17 Total: -36.61 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.59 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.05 -6.20 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.177 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds