Wall clock time and date at job start Mon Mar 30 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99578 * 2 1 4 4 N 1.34775 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.64595 * 0.05354 * 4 2 1 6 6 C 1.54330 * 107.26866 * 181.01194 * 5 4 2 7 7 C 1.55157 * 102.94049 * 22.19588 * 6 5 4 8 8 H 1.09002 * 111.00633 * 82.57450 * 7 6 5 9 9 C 1.52998 * 110.99964 * 206.38246 * 7 6 5 10 10 C 1.50698 * 109.47065 * 184.99985 * 9 7 6 11 11 H 1.08001 * 119.99884 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00238 * 180.02562 * 10 9 7 13 13 N 1.31509 * 120.00118 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47002 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46998 * 120.00131 * 14 12 10 17 17 H 1.48499 * 109.47366 * 240.00174 * 14 12 10 18 18 C 1.47426 * 125.65028 * 180.02562 * 4 2 1 19 19 H 1.08998 * 109.46872 * 239.99884 * 1 2 3 20 20 H 1.08996 * 109.47662 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46950 * 120.00592 * 1 2 3 22 22 H 1.09000 * 109.88042 * 61.59824 * 5 4 2 23 23 H 1.08996 * 109.88551 * 300.42965 * 5 4 2 24 24 H 1.08996 * 110.71860 * 263.82642 * 6 5 4 25 25 H 1.09002 * 110.71679 * 140.55640 * 6 5 4 26 26 H 1.09003 * 109.47579 * 304.99655 * 9 7 6 27 27 H 1.08997 * 109.47283 * 65.00293 * 9 7 6 28 28 H 0.96999 * 120.00172 * 179.97438 * 13 12 10 29 29 H 1.09004 * 110.36498 * 37.07621 * 18 4 2 30 30 H 1.09000 * 110.45813 * 274.80371 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5747 -2.5065 0.0000 6 6 2.7282 -3.5315 0.0269 7 6 3.9081 -2.7114 0.6123 8 1 3.8585 -2.6774 1.7006 9 6 5.2520 -3.2739 0.1449 10 6 6.3719 -2.5323 0.8281 11 1 6.1476 -1.7387 1.5255 12 6 7.6830 -2.8660 0.5620 13 7 7.9562 -3.8319 -0.2876 14 14 9.0712 -1.9461 1.4083 15 1 8.5024 -0.9134 2.3112 16 1 9.8868 -2.9011 2.2009 17 1 9.9278 -1.2931 0.3861 18 6 3.6480 -1.3122 0.0011 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3633 -0.5140 -0.8900 22 1 0.9785 -2.6432 -0.9021 23 1 0.9482 -2.6303 0.8833 24 1 2.9608 -3.8769 -0.9803 25 1 2.4826 -4.3715 0.6767 26 1 5.3104 -4.3327 0.3974 27 1 5.3412 -3.1524 -0.9346 28 1 8.8785 -4.0665 -0.4750 29 1 4.1055 -0.5380 0.6172 30 1 4.0360 -1.2648 -1.0164 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:10 Heat of formation + Delta-G solvation = -74.872419 kcal Electronic energy + Delta-G solvation = -12497.213849 eV Core-core repulsion = 10290.784647 eV Total energy + Delta-G solvation = -2206.429202 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.95068 -38.61144 -35.42718 -33.51560 -30.80468 -30.62658 -28.00248 -25.29964 -23.55337 -21.09052 -20.23097 -18.53231 -17.89060 -17.27026 -16.46317 -16.33470 -15.44650 -14.64566 -14.50294 -13.99296 -13.89520 -13.50743 -13.25822 -13.07161 -13.00195 -12.90286 -12.61728 -12.34958 -11.96622 -11.52725 -11.27618 -11.01511 -10.91875 -10.56563 -9.63962 -8.21514 -6.30629 1.36632 1.38415 1.50557 1.63287 2.10811 2.39433 3.12218 3.61415 3.79387 4.04650 4.08972 4.37630 4.53545 4.54338 4.66823 4.69972 4.87515 5.00355 5.05504 5.06330 5.18111 5.23033 5.39613 5.50557 5.70790 5.83461 6.24068 6.63478 6.84984 7.15837 7.38286 8.89969 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050605 B = 0.008482 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.174916 B = 3300.255428 C = 3724.067763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.507 3.493 3 O -0.613 6.613 4 N -0.621 5.621 5 C 0.104 3.896 6 C -0.126 4.126 7 C -0.084 4.084 8 H 0.069 0.931 9 C 0.039 3.961 10 C -0.538 4.538 11 H 0.052 0.948 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.280 1.280 18 C 0.121 3.879 19 H 0.113 0.887 20 H 0.091 0.909 21 H 0.113 0.887 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.006 0.994 27 H -0.004 1.004 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 0.495 0.886 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.299 3.701 3 O -0.496 6.496 4 N -0.354 5.354 5 C -0.017 4.017 6 C -0.163 4.163 7 C -0.104 4.104 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.576 4.576 11 H 0.070 0.930 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.780 3.220 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.206 1.206 18 C -0.002 4.002 19 H 0.131 0.869 20 H 0.110 0.890 21 H 0.131 0.869 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.024 0.976 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.376 1.009 0.809 15.430 hybrid contribution 1.471 0.417 0.198 1.541 sum -13.905 1.427 1.007 14.014 Atomic orbital electron populations 1.21891 0.86673 1.06121 1.06522 1.21633 0.92593 0.81238 0.74673 1.90683 1.72596 1.32857 1.53469 1.48894 1.07215 1.07392 1.71941 1.22295 0.95978 0.79427 1.04008 1.22754 0.93341 0.97969 1.02260 1.22253 0.95844 0.93013 0.99265 0.91293 1.18910 0.90872 0.95167 0.94905 1.21681 0.92275 1.18349 1.25302 0.92982 1.25842 1.01586 0.96019 0.95919 1.70063 1.19890 1.31007 1.36045 0.85547 0.79146 0.78730 0.78557 1.19302 1.19956 1.20552 1.22005 0.80592 0.98062 0.99535 0.86868 0.88999 0.86852 0.88604 0.88490 0.91032 0.88112 0.97599 0.98572 0.92747 0.93807 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.51 71.24 0.68 -1.95 16 2 C 0.51 15.96 7.96 87.66 0.70 16.65 16 3 O -0.61 -26.20 17.34 -3.04 -0.05 -26.25 16 4 N -0.62 -19.52 3.33 -811.84 -2.70 -22.22 16 5 C 0.10 2.26 6.49 86.73 0.56 2.82 16 6 C -0.13 -3.47 6.42 31.78 0.20 -3.26 16 7 C -0.08 -3.31 2.95 -9.41 -0.03 -3.34 16 8 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 9 C 0.04 1.98 4.49 29.85 0.13 2.11 16 10 C -0.54 -30.61 8.86 25.60 0.23 -30.38 16 11 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 12 C 0.00 0.25 5.46 84.66 0.46 0.71 16 13 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 14 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 18 C 0.12 4.90 6.13 86.85 0.53 5.43 16 19 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 21 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 27 H 0.00 -0.22 7.96 -2.39 -0.02 -0.24 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.04 2.00 8.04 -2.38 -0.02 1.99 16 30 H 0.05 2.07 7.91 -2.39 -0.02 2.05 16 Total: -1.00 -72.82 256.18 4.12 -68.70 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.10 Total: -0.36 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.47 Total: -11.20 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -2.42 Total: -78.11 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.82 4.12 -68.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.176 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds