Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99993 * 2 1 4 4 N 1.34776 * 119.99408 * 180.02562 * 2 1 3 5 5 C 1.47317 * 125.62115 * 359.85309 * 4 2 1 6 6 C 1.54323 * 107.12157 * 178.82310 * 5 4 2 7 7 C 1.55153 * 103.10236 * 338.02434 * 6 5 4 8 8 H 1.09003 * 111.00424 * 277.34027 * 7 6 5 9 9 C 1.52995 * 111.00679 * 153.52709 * 7 6 5 10 10 C 1.50699 * 109.47336 * 175.00138 * 9 7 6 11 11 H 1.07994 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99950 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00066 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00016 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46999 * 89.99833 * 14 12 10 16 16 H 1.48494 * 109.47195 * 209.99982 * 14 12 10 17 17 H 1.48497 * 109.46984 * 330.00048 * 14 12 10 18 18 C 1.47427 * 125.64391 * 180.02562 * 4 2 1 19 19 H 1.08996 * 109.47087 * 240.00018 * 1 2 3 20 20 H 1.09001 * 109.47092 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.47537 * 119.99540 * 1 2 3 22 22 H 1.09000 * 109.84974 * 59.51309 * 5 4 2 23 23 H 1.09003 * 110.06268 * 298.25586 * 5 4 2 24 24 H 1.09002 * 110.72057 * 219.57186 * 6 5 4 25 25 H 1.09003 * 110.71837 * 96.47759 * 6 5 4 26 26 H 1.09008 * 109.47285 * 295.00020 * 9 7 6 27 27 H 1.08998 * 109.47255 * 54.99600 * 9 7 6 28 28 H 0.97000 * 120.00245 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.37285 * 85.31738 * 18 4 2 30 30 H 1.09002 * 110.36636 * 322.99491 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.5726 -2.5090 0.0019 6 6 2.7279 -3.5316 -0.0301 7 6 3.9080 -2.7109 -0.6141 8 1 3.8584 -2.6754 -1.7024 9 6 5.2518 -3.2741 -0.1474 10 6 6.3718 -2.5315 -0.8295 11 1 6.1476 -1.7371 -1.5258 12 6 7.6828 -2.8658 -0.5636 13 7 7.9558 -3.8323 0.2855 14 14 9.0712 -1.9458 -1.4096 15 1 9.4630 -0.7743 -0.5855 16 1 10.2380 -2.8500 -1.5710 17 1 8.6161 -1.4818 -2.7448 18 6 3.6479 -1.3124 -0.0001 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3633 1.0277 0.0005 21 1 -0.3634 -0.5137 -0.8899 22 1 0.9441 -2.6321 -0.8800 23 1 0.9787 -2.6487 0.9053 24 1 2.4823 -4.3707 -0.6810 25 1 2.9616 -3.8810 0.9757 26 1 5.3408 -3.1540 0.9323 27 1 5.3100 -4.3325 -0.4012 28 1 8.8781 -4.0677 0.4722 29 1 4.0333 -1.2674 1.0185 30 1 4.1060 -0.5372 -0.6144 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251366.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -53.367004 kcal Electronic energy + Delta-G solvation = -12494.897170 eV Core-core repulsion = 10289.400513 eV Total energy + Delta-G solvation = -2205.496657 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.59736 -37.16256 -33.49270 -31.80079 -29.61406 -29.24346 -26.26523 -23.58010 -22.06270 -19.47413 -18.96136 -16.75604 -16.31620 -15.79863 -15.06000 -14.48442 -14.09964 -13.29964 -12.84489 -12.64615 -12.38516 -12.27832 -11.83451 -11.68668 -11.47180 -11.26768 -10.81984 -10.50124 -10.27073 -9.94169 -9.62424 -9.32303 -9.04740 -8.37977 -8.29521 -6.02230 -4.04558 2.87926 3.32922 3.35474 3.39353 3.43172 4.45580 4.76509 5.02500 5.21203 5.22073 5.33603 5.41254 5.44683 5.62144 5.79536 5.88329 6.08851 6.26155 6.37152 6.51160 6.62732 6.81441 6.99873 7.59932 7.70722 7.87346 7.96238 8.37483 8.42966 9.01528 9.60248 11.08858 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050583 B = 0.008482 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.412418 B = 3300.462217 C = 3724.519077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.518 3.482 3 O -0.554 6.554 4 N -0.620 5.620 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.088 4.088 8 H 0.071 0.929 9 C 0.033 3.967 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.117 3.883 19 H 0.083 0.917 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 0.829 -0.321 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.307 3.693 3 O -0.433 6.433 4 N -0.354 5.354 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.107 4.107 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.005 4.005 19 H 0.102 0.898 20 H 0.106 0.894 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.224 1.366 -0.240 13.297 hybrid contribution 0.804 0.340 -0.390 0.956 sum -12.421 1.706 -0.630 12.553 Atomic orbital electron populations 1.21876 0.92185 1.04839 1.03828 1.20406 0.90154 0.82413 0.76344 1.90710 1.70924 1.30788 1.50897 1.48856 1.08854 1.05458 1.72258 1.22096 0.96718 0.82591 1.00669 1.22770 0.94814 0.97158 1.02376 1.22513 0.96500 0.92300 0.99437 0.91037 1.19064 0.88454 0.96249 0.96681 1.21237 0.90940 1.18278 1.25465 0.92592 1.25001 0.98940 0.95134 0.95223 1.69953 1.19260 1.29516 1.34750 0.86611 0.81793 0.79688 0.80060 1.20612 1.21238 1.19859 1.22383 0.77744 0.98927 1.01415 0.89793 0.89380 0.89767 0.91902 0.91946 0.90604 0.90682 0.96160 0.95921 0.92969 0.91426 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.51 36.01 0.34 -1.44 16 2 C 0.52 8.57 7.96 -10.98 -0.09 8.48 16 3 O -0.55 -11.70 17.34 5.56 0.10 -11.60 16 4 N -0.62 -10.25 3.33 -170.26 -0.57 -10.82 16 5 C 0.10 1.32 6.51 -2.90 -0.02 1.30 16 6 C -0.13 -2.00 6.41 -24.90 -0.16 -2.16 16 7 C -0.09 -1.72 2.95 -88.46 -0.26 -1.99 16 8 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 9 C 0.03 0.81 4.49 -27.89 -0.13 0.68 16 10 C -0.52 -14.42 8.86 -34.44 -0.31 -14.72 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 14 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.12 2.30 6.13 -2.51 -0.02 2.29 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 26 H 0.02 0.53 7.97 -51.92 -0.41 0.11 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 30 H 0.08 1.64 8.04 -51.93 -0.42 1.23 16 LS Contribution 256.21 15.07 3.86 3.86 Total: -1.00 -32.02 256.21 -6.20 -38.22 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.58 Total: -4.60 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.73 Total: -6.00 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.17 Total: -36.61 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.02 -6.20 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251366.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.142 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds