Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99993 * 2 1 4 4 N 1.34776 * 119.99408 * 180.02562 * 2 1 3 5 5 C 1.47317 * 125.62115 * 359.85309 * 4 2 1 6 6 C 1.54323 * 107.12157 * 178.82310 * 5 4 2 7 7 C 1.55153 * 103.10236 * 338.02434 * 6 5 4 8 8 H 1.09003 * 111.00424 * 277.34027 * 7 6 5 9 9 C 1.52995 * 111.00679 * 153.52709 * 7 6 5 10 10 C 1.50699 * 109.47336 * 175.00138 * 9 7 6 11 11 H 1.07994 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99950 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00066 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00016 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46999 * 89.99833 * 14 12 10 16 16 H 1.48494 * 109.47195 * 209.99982 * 14 12 10 17 17 H 1.48497 * 109.46984 * 330.00048 * 14 12 10 18 18 C 1.47427 * 125.64391 * 180.02562 * 4 2 1 19 19 H 1.08996 * 109.47087 * 240.00018 * 1 2 3 20 20 H 1.09001 * 109.47092 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.47537 * 119.99540 * 1 2 3 22 22 H 1.09000 * 109.84974 * 59.51309 * 5 4 2 23 23 H 1.09003 * 110.06268 * 298.25586 * 5 4 2 24 24 H 1.09002 * 110.72057 * 219.57186 * 6 5 4 25 25 H 1.09003 * 110.71837 * 96.47759 * 6 5 4 26 26 H 1.09008 * 109.47285 * 295.00020 * 9 7 6 27 27 H 1.08998 * 109.47255 * 54.99600 * 9 7 6 28 28 H 0.97000 * 120.00245 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.37285 * 85.31738 * 18 4 2 30 30 H 1.09002 * 110.36636 * 322.99491 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.5726 -2.5090 0.0019 6 6 2.7279 -3.5316 -0.0301 7 6 3.9080 -2.7109 -0.6141 8 1 3.8584 -2.6754 -1.7024 9 6 5.2518 -3.2741 -0.1474 10 6 6.3718 -2.5315 -0.8295 11 1 6.1476 -1.7371 -1.5258 12 6 7.6828 -2.8658 -0.5636 13 7 7.9558 -3.8323 0.2855 14 14 9.0712 -1.9458 -1.4096 15 1 9.4630 -0.7743 -0.5855 16 1 10.2380 -2.8500 -1.5710 17 1 8.6161 -1.4818 -2.7448 18 6 3.6479 -1.3124 -0.0001 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3633 1.0277 0.0005 21 1 -0.3634 -0.5137 -0.8899 22 1 0.9441 -2.6321 -0.8800 23 1 0.9787 -2.6487 0.9053 24 1 2.4823 -4.3707 -0.6810 25 1 2.9616 -3.8810 0.9757 26 1 5.3408 -3.1540 0.9323 27 1 5.3100 -4.3325 -0.4012 28 1 8.8781 -4.0677 0.4722 29 1 4.0333 -1.2674 1.0185 30 1 4.1060 -0.5372 -0.6144 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251366.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -74.791789 kcal Electronic energy + Delta-G solvation = -12495.826219 eV Core-core repulsion = 10289.400513 eV Total energy + Delta-G solvation = -2206.425706 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93463 -38.60181 -35.41975 -33.50756 -30.80233 -30.62889 -27.99624 -25.29726 -23.54777 -21.08771 -20.22922 -18.52875 -17.88520 -17.26031 -16.46566 -16.33193 -15.44551 -14.64232 -14.49904 -13.99110 -13.89138 -13.50272 -13.26110 -13.07763 -12.99939 -12.89659 -12.60667 -12.34381 -11.98399 -11.52240 -11.27552 -11.01940 -10.91714 -10.56254 -9.64140 -8.21252 -6.30452 1.37629 1.38807 1.49237 1.63565 2.10516 2.39513 3.12398 3.60960 3.79981 4.04614 4.08979 4.37742 4.53483 4.54252 4.66923 4.70103 4.87497 5.00416 5.05492 5.06354 5.18209 5.22764 5.39537 5.50551 5.70787 5.83489 6.24128 6.63211 6.84925 7.16003 7.38337 8.90003 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050583 B = 0.008482 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.412418 B = 3300.462217 C = 3724.519077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.507 3.493 3 O -0.613 6.613 4 N -0.622 5.622 5 C 0.105 3.895 6 C -0.126 4.126 7 C -0.084 4.084 8 H 0.069 0.931 9 C 0.039 3.961 10 C -0.539 4.539 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.955 3.045 15 H -0.277 1.277 16 H -0.278 1.278 17 H -0.267 1.267 18 C 0.121 3.879 19 H 0.113 0.887 20 H 0.091 0.909 21 H 0.113 0.887 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.071 0.929 26 H -0.004 1.004 27 H 0.006 0.994 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.754 0.494 -0.888 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.299 3.701 3 O -0.496 6.496 4 N -0.355 5.355 5 C -0.017 4.017 6 C -0.164 4.164 7 C -0.103 4.103 8 H 0.087 0.913 9 C 0.002 3.998 10 C -0.577 4.577 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.780 3.220 15 H -0.203 1.203 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.002 4.002 19 H 0.131 0.869 20 H 0.110 0.890 21 H 0.131 0.869 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.014 0.986 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.375 1.003 -0.813 15.430 hybrid contribution 1.466 0.427 -0.192 1.539 sum -13.909 1.430 -1.005 14.019 Atomic orbital electron populations 1.21890 0.86689 1.06114 1.06516 1.21632 0.92594 0.81245 0.74672 1.90682 1.72591 1.32865 1.53486 1.48972 1.07208 1.07390 1.71937 1.22349 0.95942 0.79331 1.04034 1.22747 0.93369 0.97977 1.02275 1.22256 0.95820 0.93022 0.99248 0.91294 1.18905 0.90867 0.95157 0.94892 1.21654 0.92279 1.18318 1.25463 0.92961 1.25844 1.01574 0.96003 0.95923 1.70059 1.19942 1.30914 1.36057 0.85602 0.78794 0.78462 0.79163 1.20313 1.20329 1.19099 1.22015 0.80583 0.98068 0.99510 0.86859 0.89011 0.86871 0.88456 0.88543 0.88147 0.91056 0.98592 0.97613 0.92745 0.93446 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.51 71.24 0.68 -1.95 16 2 C 0.51 15.95 7.96 87.66 0.70 16.65 16 3 O -0.61 -26.20 17.34 -3.03 -0.05 -26.25 16 4 N -0.62 -19.53 3.33 -810.99 -2.70 -22.23 16 5 C 0.10 2.26 6.51 86.67 0.56 2.83 16 6 C -0.13 -3.48 6.41 31.78 0.20 -3.28 16 7 C -0.08 -3.30 2.95 -9.40 -0.03 -3.33 16 8 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 9 C 0.04 1.99 4.49 29.85 0.13 2.13 16 10 C -0.54 -30.67 8.86 25.60 0.23 -30.44 16 11 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 14 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 C 0.12 4.91 6.13 86.86 0.53 5.44 16 19 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 20 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 21 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 26 H 0.00 -0.24 7.97 -2.38 -0.02 -0.25 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.05 2.07 7.91 -2.39 -0.02 2.05 16 30 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -72.77 256.21 4.12 -68.65 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: 1.10 Total: -0.27 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 3.47 Total: -11.22 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -2.42 Total: -78.12 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -72.77 4.12 -68.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251366.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.141 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds