Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 120.00050 * 2 1 4 4 N 1.34771 * 119.99997 * 180.02562 * 2 1 3 5 5 C 1.47582 * 134.49722 * 359.97438 * 4 2 1 6 6 C 1.53943 * 86.11994 * 155.35921 * 5 4 2 7 7 C 1.47586 * 134.49186 * 179.97438 * 4 2 1 8 8 H 1.09004 * 113.86849 * 90.32878 * 7 4 2 9 9 C 1.53001 * 113.76923 * 318.94390 * 7 4 2 10 10 H 1.08998 * 109.47065 * 323.49901 * 9 7 4 11 11 C 1.53006 * 109.46578 * 203.50286 * 9 7 4 12 12 C 1.50697 * 109.46995 * 83.50476 * 9 7 4 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 9 7 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 H 1.08997 * 109.46845 * 269.99193 * 1 2 3 21 21 H 1.08999 * 109.47012 * 29.99844 * 1 2 3 22 22 H 1.09003 * 109.46759 * 149.99654 * 1 2 3 23 23 H 1.08998 * 113.76719 * 41.05358 * 5 4 2 24 24 H 1.09001 * 113.76762 * 269.66799 * 5 4 2 25 25 H 1.08996 * 113.74353 * 269.25823 * 6 5 4 26 26 H 1.09001 * 113.74049 * 137.95194 * 6 5 4 27 27 H 1.08994 * 109.47204 * 59.99946 * 11 9 7 28 28 H 1.09006 * 109.46531 * 179.97438 * 11 9 7 29 29 H 1.08998 * 109.47109 * 299.99589 * 11 9 7 30 30 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.7864 -2.5893 -0.0007 6 6 3.1593 -2.8619 -0.6416 7 6 3.6098 -1.5365 -0.0012 8 1 4.0358 -1.6526 0.9955 9 6 4.4707 -0.6683 -0.9210 10 1 3.9053 -0.4185 -1.8187 11 6 5.7346 -1.4371 -1.3117 12 6 4.8556 0.5983 -0.2008 13 1 4.5161 0.7692 0.8100 14 6 5.6370 1.5413 -0.8344 15 7 6.0509 1.3328 -2.0652 16 14 6.1077 3.1147 0.0556 17 1 6.8742 2.7793 1.2824 18 1 6.9444 3.9567 -0.8368 19 1 4.8781 3.8594 0.4282 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 0.9439 -2.8114 -0.6556 24 1 1.6750 -3.0144 0.9968 25 1 3.1468 -2.8409 -1.7313 26 1 3.6656 -3.7387 -0.2381 27 1 5.4562 -2.3532 -1.8325 28 1 6.3478 -0.8187 -1.9674 29 1 6.3000 -1.6869 -0.4140 30 1 6.6009 1.9961 -2.5107 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304655.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = -5.793829 kcal Electronic energy + Delta-G solvation = -13041.956217 eV Core-core repulsion = 10838.522487 eV Total energy + Delta-G solvation = -2203.433729 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56562 -36.88655 -33.69537 -30.81168 -29.72411 -27.79659 -24.99459 -24.61941 -21.48330 -20.10208 -17.92892 -16.38666 -15.84318 -15.05072 -14.99861 -14.21460 -13.71971 -12.79512 -12.55723 -12.41941 -11.95685 -11.76561 -11.49728 -11.33882 -11.03248 -10.83365 -10.65285 -10.45054 -10.12969 -9.88043 -9.16826 -8.67581 -8.64214 -8.10307 -7.83160 -5.74040 -3.73245 3.47870 3.49744 3.52326 3.59155 3.60899 4.68176 5.01010 5.08664 5.42952 5.49423 5.59373 5.62457 5.75162 5.85875 6.03416 6.09171 6.17421 6.54857 6.61822 6.75791 6.95803 7.21370 7.37810 7.91125 8.10513 8.30723 8.55981 8.67149 9.07866 9.24052 9.87469 11.33387 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.014102 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.064163 B = 1985.123375 C = 2557.282174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.513 3.487 3 O -0.502 6.502 4 N -0.641 5.641 5 C 0.097 3.903 6 C -0.154 4.154 7 C 0.150 3.850 8 H 0.076 0.924 9 C 0.045 3.955 10 H 0.029 0.971 11 C -0.133 4.133 12 C -0.471 4.471 13 H 0.051 0.949 14 C 0.057 3.943 15 N -0.903 5.903 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.278 1.278 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.008 0.992 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 -8.916 3.063 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.301 3.699 3 O -0.375 6.375 4 N -0.379 5.379 5 C -0.027 4.027 6 C -0.192 4.192 7 C 0.048 3.952 8 H 0.094 0.906 9 C 0.026 3.974 10 H 0.047 0.953 11 C -0.192 4.192 12 C -0.509 4.509 13 H 0.070 0.930 14 C -0.142 4.142 15 N -0.545 5.545 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.203 1.203 20 H 0.100 0.900 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.244 -8.016 2.934 11.867 hybrid contribution 0.078 0.847 0.525 1.000 sum -8.166 -7.168 3.458 11.403 Atomic orbital electron populations 1.21842 0.93510 1.03734 1.03466 1.20280 0.89264 0.82968 0.77390 1.90893 1.69687 1.29720 1.47213 1.50263 1.09486 1.04051 1.74087 1.23069 0.98286 0.81558 0.99779 1.23624 0.95432 0.98668 1.01445 1.23067 0.82029 0.90854 0.99232 0.90618 1.18782 0.91661 0.92925 0.94026 0.95332 1.21746 1.00340 0.97113 0.99973 1.20915 1.28606 1.01563 0.99859 0.93050 1.24838 0.96596 0.97878 0.94876 1.69866 1.37593 1.35082 1.11921 0.86693 0.78108 0.84106 0.79264 1.20731 1.21730 1.20333 0.89989 0.89667 0.91247 0.91131 0.90798 0.89387 0.90842 0.97285 0.89583 0.95558 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.14 36.01 0.37 -2.01 16 2 C 0.51 10.68 8.07 -10.99 -0.09 10.59 16 3 O -0.50 -13.44 15.34 5.56 0.09 -13.35 16 4 N -0.64 -12.35 3.49 -171.17 -0.60 -12.95 16 5 C 0.10 1.31 8.42 -2.98 -0.03 1.28 16 6 C -0.15 -2.37 6.92 -25.81 -0.18 -2.55 16 7 C 0.15 3.12 3.60 -66.86 -0.24 2.87 16 8 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 9 C 0.04 1.16 1.94 -91.77 -0.18 0.98 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.13 -3.22 8.77 37.16 0.33 -2.89 16 12 C -0.47 -13.92 6.66 -34.44 -0.23 -14.15 16 13 H 0.05 1.58 7.49 -52.49 -0.39 1.18 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 15 N -0.90 -27.64 11.31 55.43 0.63 -27.02 16 16 Si 0.89 23.68 29.54 -169.99 -5.02 18.66 16 17 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 19 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 21 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 22 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 23 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.01 0.17 7.43 -51.93 -0.39 -0.21 16 28 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 250.74 15.07 3.78 3.78 Total: -1.00 -34.49 250.74 -5.89 -40.37 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -4.41 Total: -5.25 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.34 Total: -4.24 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.03 Total: -39.96 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.49 -5.89 -40.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304655.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.578 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds