Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 120.00050 * 2 1 4 4 N 1.34771 * 119.99997 * 180.02562 * 2 1 3 5 5 C 1.47582 * 134.49722 * 359.97438 * 4 2 1 6 6 C 1.53943 * 86.11994 * 155.35921 * 5 4 2 7 7 C 1.47586 * 134.49186 * 179.97438 * 4 2 1 8 8 H 1.09004 * 113.86849 * 90.32878 * 7 4 2 9 9 C 1.53001 * 113.76923 * 318.94390 * 7 4 2 10 10 H 1.08998 * 109.47065 * 323.49901 * 9 7 4 11 11 C 1.53006 * 109.46578 * 203.50286 * 9 7 4 12 12 C 1.50697 * 109.46995 * 83.50476 * 9 7 4 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 9 7 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 H 1.08997 * 109.46845 * 269.99193 * 1 2 3 21 21 H 1.08999 * 109.47012 * 29.99844 * 1 2 3 22 22 H 1.09003 * 109.46759 * 149.99654 * 1 2 3 23 23 H 1.08998 * 113.76719 * 41.05358 * 5 4 2 24 24 H 1.09001 * 113.76762 * 269.66799 * 5 4 2 25 25 H 1.08996 * 113.74353 * 269.25823 * 6 5 4 26 26 H 1.09001 * 113.74049 * 137.95194 * 6 5 4 27 27 H 1.08994 * 109.47204 * 59.99946 * 11 9 7 28 28 H 1.09006 * 109.46531 * 179.97438 * 11 9 7 29 29 H 1.08998 * 109.47109 * 299.99589 * 11 9 7 30 30 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.7864 -2.5893 -0.0007 6 6 3.1593 -2.8619 -0.6416 7 6 3.6098 -1.5365 -0.0012 8 1 4.0358 -1.6526 0.9955 9 6 4.4707 -0.6683 -0.9210 10 1 3.9053 -0.4185 -1.8187 11 6 5.7346 -1.4371 -1.3117 12 6 4.8556 0.5983 -0.2008 13 1 4.5161 0.7692 0.8100 14 6 5.6370 1.5413 -0.8344 15 7 6.0509 1.3328 -2.0652 16 14 6.1077 3.1147 0.0556 17 1 6.8742 2.7793 1.2824 18 1 6.9444 3.9567 -0.8368 19 1 4.8781 3.8594 0.4282 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 0.9439 -2.8114 -0.6556 24 1 1.6750 -3.0144 0.9968 25 1 3.1468 -2.8409 -1.7313 26 1 3.6656 -3.7387 -0.2381 27 1 5.4562 -2.3532 -1.8325 28 1 6.3478 -0.8187 -1.9674 29 1 6.3000 -1.6869 -0.4140 30 1 6.6009 1.9961 -2.5107 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304655.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = -30.431342 kcal Electronic energy + Delta-G solvation = -13043.024580 eV Core-core repulsion = 10838.522487 eV Total energy + Delta-G solvation = -2204.502092 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.05125 -38.51914 -35.77621 -32.74115 -31.33043 -29.09013 -27.07042 -26.28053 -22.89955 -21.91722 -19.46094 -18.39181 -17.54551 -16.80733 -16.56428 -16.06836 -15.19522 -14.71374 -14.12765 -13.88163 -13.50114 -13.23306 -13.08960 -12.94790 -12.82235 -12.71477 -12.39518 -12.21158 -12.13577 -11.91848 -11.01668 -10.74507 -10.40689 -10.33294 -9.37401 -8.03217 -6.07898 1.30940 1.36519 1.43781 1.95719 2.21247 2.46246 3.25940 3.74517 3.80806 4.29426 4.37560 4.55381 4.62803 4.67134 4.69423 4.82796 4.87247 5.02027 5.05514 5.16319 5.20084 5.40498 5.48807 5.67714 5.99554 6.20234 6.43012 6.94375 7.13771 7.54274 7.55176 9.01898 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.014102 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.064163 B = 1985.123375 C = 2557.282174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.494 3.506 3 O -0.584 6.584 4 N -0.651 5.651 5 C 0.111 3.889 6 C -0.138 4.138 7 C 0.129 3.871 8 H 0.073 0.927 9 C 0.046 3.954 10 H -0.017 1.017 11 C -0.122 4.122 12 C -0.477 4.477 13 H 0.029 0.971 14 C 0.004 3.996 15 N -0.926 5.926 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.292 1.292 20 H 0.107 0.893 21 H 0.082 0.918 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 -11.161 3.826 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.285 3.715 3 O -0.463 6.463 4 N -0.387 5.387 5 C -0.010 4.010 6 C -0.175 4.175 7 C 0.026 3.974 8 H 0.091 0.909 9 C 0.027 3.973 10 H 0.001 0.999 11 C -0.180 4.180 12 C -0.516 4.516 13 H 0.047 0.953 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.768 3.232 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.219 1.219 20 H 0.126 0.874 21 H 0.101 0.899 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.669 -10.330 3.703 14.626 hybrid contribution 0.491 1.497 0.293 1.602 sum -9.179 -8.834 3.996 13.351 Atomic orbital electron populations 1.21782 0.88166 1.05341 1.05564 1.21539 0.91886 0.82309 0.75783 1.90843 1.71827 1.32617 1.51039 1.50562 1.09185 1.06311 1.72646 1.23387 0.98274 0.77192 1.02161 1.23535 0.96545 0.96480 1.00967 1.23013 0.82562 0.93319 0.98485 0.90904 1.18665 0.92763 0.92974 0.92905 0.99910 1.21544 0.99017 0.97659 0.99797 1.21163 1.27853 1.03461 0.99121 0.95259 1.25546 0.97150 1.00686 0.95766 1.69988 1.38227 1.35808 1.12793 0.85880 0.77355 0.80925 0.79023 1.19192 1.20471 1.21881 0.87443 0.89904 0.87756 0.87675 0.87469 0.90082 0.87371 0.93767 0.93073 0.94865 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 10.14 71.24 0.72 -3.15 16 2 C 0.49 20.42 8.07 87.66 0.71 21.13 16 3 O -0.58 -32.61 15.34 -3.04 -0.05 -32.66 16 4 N -0.65 -24.00 3.49 -813.86 -2.84 -26.84 16 5 C 0.11 2.46 8.42 86.48 0.73 3.19 16 6 C -0.14 -3.73 6.92 31.25 0.22 -3.51 16 7 C 0.13 5.25 3.60 45.09 0.16 5.41 16 8 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 9 C 0.05 2.43 1.94 -11.54 -0.02 2.41 16 10 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 11 C -0.12 -5.89 8.77 71.98 0.63 -5.26 16 12 C -0.48 -29.27 6.66 25.60 0.17 -29.10 16 13 H 0.03 1.88 7.49 -2.92 -0.02 1.85 16 14 C 0.00 0.27 5.31 84.66 0.45 0.72 16 15 N -0.93 -58.51 11.31 21.45 0.24 -58.27 16 16 Si 0.94 50.03 29.54 68.60 2.03 52.06 16 17 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 19 H -0.29 -16.13 7.11 99.48 0.71 -15.42 16 20 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.10 1.96 7.65 -2.39 -0.02 1.94 16 23 H 0.11 1.69 7.92 -2.39 -0.02 1.67 16 24 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 2.34 8.06 -2.39 -0.02 2.32 16 26 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.04 1.77 7.43 -2.39 -0.02 1.75 16 28 H 0.05 2.83 6.06 -2.38 -0.01 2.82 16 29 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -81.00 250.74 4.25 -76.75 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.10 Total: -2.86 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.77 Total: -8.18 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.60 Total: -85.11 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.03 Total: 52.06 kcal Total: -81.00 4.25 -76.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304655.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.322 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds