Wall clock time and date at job start Mon Mar 30 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 119.99702 * 2 1 4 4 N 1.34773 * 120.00121 * 179.97438 * 2 1 3 5 5 C 1.47071 * 136.05733 * 359.96323 * 4 2 1 6 6 C 1.53615 * 88.00477 * 152.95474 * 5 4 2 7 7 C 1.47068 * 136.05945 * 179.97438 * 4 2 1 8 8 H 1.09000 * 113.46829 * 92.25430 * 7 4 2 9 9 C 1.53000 * 113.46864 * 321.87816 * 7 4 2 10 10 H 1.09004 * 109.46806 * 205.40974 * 9 7 4 11 11 C 1.53001 * 109.47078 * 325.40554 * 9 7 4 12 12 C 1.50693 * 109.47618 * 85.40686 * 9 7 4 13 13 H 1.07999 * 119.99660 * 354.36813 * 12 9 7 14 14 C 1.37874 * 120.00296 * 174.36671 * 12 9 7 15 15 N 1.31514 * 120.00093 * 156.99107 * 14 12 9 16 16 Si 1.86794 * 120.00016 * 336.99169 * 14 12 9 17 17 H 1.48499 * 109.47317 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47377 * 300.00028 * 16 14 12 19 19 H 1.48503 * 109.47214 * 60.00055 * 16 14 12 20 20 H 1.09004 * 109.47258 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47591 * 300.00520 * 1 2 3 22 22 H 1.09005 * 109.46978 * 60.00525 * 1 2 3 23 23 H 1.09000 * 113.46344 * 267.68476 * 5 4 2 24 24 H 1.09000 * 113.46855 * 38.06345 * 5 4 2 25 25 H 1.08994 * 114.20698 * 272.44834 * 6 5 4 26 26 H 1.09004 * 114.23572 * 139.58766 * 6 5 4 27 27 H 1.09002 * 109.47128 * 293.50151 * 11 9 7 28 28 H 1.09001 * 109.47164 * 53.49427 * 11 9 7 29 29 H 1.08994 * 109.47265 * 173.49400 * 11 9 7 30 30 H 0.97010 * 120.00012 * 354.91131 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0018 6 6 3.1660 -2.8726 -0.6968 7 6 3.5941 -1.5740 0.0002 8 1 4.0008 -1.7312 0.9993 9 6 4.4847 -0.6821 -0.8671 10 1 5.3587 -1.2470 -1.1915 11 6 3.6976 -0.2125 -2.0921 12 6 4.9290 0.5148 -0.0665 13 1 4.5366 0.6759 0.9267 14 6 5.8365 1.4040 -0.6018 15 7 5.8931 2.6378 -0.1499 16 14 6.9856 0.8565 -1.9689 17 1 7.8574 1.9909 -2.3669 18 1 7.8270 -0.2685 -1.4876 19 1 6.1864 0.4116 -3.1388 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.7617 -3.0247 1.0012 24 1 0.9575 -2.8267 -0.6140 25 1 3.1259 -2.8039 -1.7838 26 1 3.6815 -3.7635 -0.3378 27 1 3.4757 -1.0673 -2.7311 28 1 2.7655 0.2513 -1.7692 29 1 4.2905 0.5131 -2.6488 30 1 5.2484 2.9438 0.5072 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:36 Heat of formation + Delta-G solvation = 5.836191 kcal Electronic energy + Delta-G solvation = -13250.891846 eV Core-core repulsion = 11047.962432 eV Total energy + Delta-G solvation = -2202.929414 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01034 -37.05502 -33.61476 -31.04440 -30.07669 -27.90738 -25.25776 -24.24575 -21.64417 -20.01361 -17.67562 -17.19216 -16.13157 -15.65531 -14.88699 -14.10639 -13.54062 -13.06727 -12.69852 -12.52971 -12.21112 -12.14042 -11.78726 -11.42527 -11.17583 -11.07637 -10.36787 -10.27034 -9.92816 -9.61582 -9.35607 -8.88304 -8.65101 -7.96547 -7.89338 -6.15895 -3.69077 3.36698 3.51903 3.54458 3.55429 3.74735 4.72363 4.82902 4.99744 5.34194 5.38914 5.49188 5.55630 5.69227 5.75955 5.92720 5.98705 6.03689 6.29104 6.42657 6.59218 6.68837 6.96752 7.19177 7.37579 7.69941 8.40285 8.52871 8.70627 8.98088 9.22798 9.93457 11.21249 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041733 B = 0.014267 C = 0.011903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.768279 B = 1962.157904 C = 2351.787920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.520 3.480 3 O -0.496 6.496 4 N -0.638 5.638 5 C 0.099 3.901 6 C -0.163 4.163 7 C 0.154 3.846 8 H 0.079 0.921 9 C 0.015 3.985 10 H 0.026 0.974 11 C -0.142 4.142 12 C -0.570 4.570 13 H 0.053 0.947 14 C 0.030 3.970 15 N -0.909 5.909 16 Si 1.037 2.963 17 H -0.289 1.289 18 H -0.287 1.287 19 H -0.281 1.281 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.010 0.990 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -12.180 -1.376 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.309 3.691 3 O -0.369 6.369 4 N -0.377 5.377 5 C -0.025 4.025 6 C -0.201 4.201 7 C 0.051 3.949 8 H 0.097 0.903 9 C -0.004 4.004 10 H 0.043 0.957 11 C -0.200 4.200 12 C -0.607 4.607 13 H 0.071 0.929 14 C -0.175 4.175 15 N -0.543 5.543 16 Si 0.866 3.134 17 H -0.215 1.215 18 H -0.213 1.213 19 H -0.208 1.208 20 H 0.085 0.915 21 H 0.104 0.896 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.782 -10.836 -2.312 13.540 hybrid contribution -1.458 -0.558 1.030 1.870 sum -9.240 -11.394 -1.282 14.726 Atomic orbital electron populations 1.21813 0.93209 1.03062 1.04364 1.20111 0.89161 0.82551 0.77325 1.90928 1.69482 1.29540 1.46936 1.49808 1.09731 1.04200 1.73945 1.22852 0.98247 0.81627 0.99775 1.23602 0.96524 0.98769 1.01194 1.22677 0.82789 0.90550 0.98849 0.90273 1.19100 0.92781 0.95445 0.93081 0.95667 1.22260 1.01768 0.98164 0.97767 1.21716 1.27812 1.08380 1.02827 0.92921 1.25583 0.98283 0.93227 1.00370 1.70773 1.38726 1.15074 1.29711 0.84157 0.76825 0.75568 0.76832 1.21545 1.21345 1.20759 0.91533 0.89552 0.89541 0.90757 0.91423 0.88992 0.90227 0.97071 0.92489 0.93851 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.36 36.00 0.37 -1.94 16 2 C 0.52 10.58 6.63 -10.99 -0.07 10.51 16 3 O -0.50 -13.15 14.26 5.56 0.08 -13.07 16 4 N -0.64 -11.91 3.00 -177.24 -0.53 -12.44 16 5 C 0.10 1.29 7.99 -8.44 -0.07 1.22 16 6 C -0.16 -2.34 7.86 -26.16 -0.21 -2.55 16 7 C 0.15 3.08 3.76 -72.40 -0.27 2.81 16 8 H 0.08 1.62 8.13 -51.93 -0.42 1.20 16 9 C 0.02 0.38 1.81 -91.77 -0.17 0.21 16 10 H 0.03 0.61 6.72 -51.93 -0.35 0.26 16 11 C -0.14 -3.43 8.21 37.16 0.31 -3.12 16 12 C -0.57 -17.01 7.19 -34.44 -0.25 -17.26 16 13 H 0.05 1.75 7.85 -52.49 -0.41 1.34 16 14 C 0.03 0.91 5.20 -17.82 -0.09 0.82 16 15 N -0.91 -30.13 13.70 55.43 0.76 -29.37 16 16 Si 1.04 26.70 26.44 -169.99 -4.49 22.21 16 17 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.82 6.13 56.52 0.35 -6.47 16 20 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 21 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 25 H 0.09 1.34 6.76 -51.93 -0.35 0.99 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.01 0.22 6.88 -51.93 -0.36 -0.14 16 28 H 0.06 1.43 4.20 -51.93 -0.22 1.21 16 29 H 0.04 1.12 5.45 -51.93 -0.28 0.84 16 30 H 0.27 9.08 8.73 -40.82 -0.36 8.73 16 LS Contribution 239.32 15.07 3.61 3.61 Total: -1.00 -35.93 239.32 -5.11 -41.04 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.08 Total: -2.69 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.45 Total: -9.29 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.23 Total: -41.81 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -4.49 Total: 22.21 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -35.93 -5.11 -41.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.879 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds