Wall clock time and date at job start Mon Mar 30 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 119.99702 * 2 1 4 4 N 1.34773 * 120.00121 * 179.97438 * 2 1 3 5 5 C 1.47071 * 136.05733 * 359.96323 * 4 2 1 6 6 C 1.53615 * 88.00477 * 152.95474 * 5 4 2 7 7 C 1.47068 * 136.05945 * 179.97438 * 4 2 1 8 8 H 1.09000 * 113.46829 * 92.25430 * 7 4 2 9 9 C 1.53000 * 113.46864 * 321.87816 * 7 4 2 10 10 H 1.09004 * 109.46806 * 205.40974 * 9 7 4 11 11 C 1.53001 * 109.47078 * 325.40554 * 9 7 4 12 12 C 1.50693 * 109.47618 * 85.40686 * 9 7 4 13 13 H 1.07999 * 119.99660 * 354.36813 * 12 9 7 14 14 C 1.37874 * 120.00296 * 174.36671 * 12 9 7 15 15 N 1.31514 * 120.00093 * 156.99107 * 14 12 9 16 16 Si 1.86794 * 120.00016 * 336.99169 * 14 12 9 17 17 H 1.48499 * 109.47317 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47377 * 300.00028 * 16 14 12 19 19 H 1.48503 * 109.47214 * 60.00055 * 16 14 12 20 20 H 1.09004 * 109.47258 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47591 * 300.00520 * 1 2 3 22 22 H 1.09005 * 109.46978 * 60.00525 * 1 2 3 23 23 H 1.09000 * 113.46344 * 267.68476 * 5 4 2 24 24 H 1.09000 * 113.46855 * 38.06345 * 5 4 2 25 25 H 1.08994 * 114.20698 * 272.44834 * 6 5 4 26 26 H 1.09004 * 114.23572 * 139.58766 * 6 5 4 27 27 H 1.09002 * 109.47128 * 293.50151 * 11 9 7 28 28 H 1.09001 * 109.47164 * 53.49427 * 11 9 7 29 29 H 1.08994 * 109.47265 * 173.49400 * 11 9 7 30 30 H 0.97010 * 120.00012 * 354.91131 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0018 6 6 3.1660 -2.8726 -0.6968 7 6 3.5941 -1.5740 0.0002 8 1 4.0008 -1.7312 0.9993 9 6 4.4847 -0.6821 -0.8671 10 1 5.3587 -1.2470 -1.1915 11 6 3.6976 -0.2125 -2.0921 12 6 4.9290 0.5148 -0.0665 13 1 4.5366 0.6759 0.9267 14 6 5.8365 1.4040 -0.6018 15 7 5.8931 2.6378 -0.1499 16 14 6.9856 0.8565 -1.9689 17 1 7.8574 1.9909 -2.3669 18 1 7.8270 -0.2685 -1.4876 19 1 6.1864 0.4116 -3.1388 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.7617 -3.0247 1.0012 24 1 0.9575 -2.8267 -0.6140 25 1 3.1259 -2.8039 -1.7838 26 1 3.6815 -3.7635 -0.3378 27 1 3.4757 -1.0673 -2.7311 28 1 2.7655 0.2513 -1.7692 29 1 4.2905 0.5131 -2.6488 30 1 5.2484 2.9438 0.5072 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:36 Heat of formation + Delta-G solvation = -21.736463 kcal Electronic energy + Delta-G solvation = -13252.087486 eV Core-core repulsion = 11047.962432 eV Total energy + Delta-G solvation = -2204.125054 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.45697 -38.64922 -35.70482 -33.08079 -31.59988 -29.12306 -27.05503 -26.14749 -22.97788 -21.79899 -19.49548 -19.16038 -17.57957 -17.20839 -16.41944 -15.77601 -15.30389 -14.98222 -14.23346 -14.14117 -13.73239 -13.49611 -13.21197 -13.07923 -12.77967 -12.46610 -12.25329 -12.06172 -11.80831 -11.62107 -11.02783 -10.93723 -10.48723 -10.27394 -9.44702 -8.61578 -6.14775 1.43673 1.53861 1.71347 1.86914 2.18922 2.57148 3.13297 3.61977 3.78718 4.22851 4.32708 4.41303 4.52729 4.60660 4.63341 4.66010 4.77318 4.88063 4.95906 5.01596 5.07858 5.28997 5.43254 5.50176 5.78024 6.10725 6.26536 6.69378 7.10991 7.48693 7.57642 8.71698 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041733 B = 0.014267 C = 0.011903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.768279 B = 1962.157904 C = 2351.787920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.503 3.497 3 O -0.581 6.581 4 N -0.647 5.647 5 C 0.107 3.893 6 C -0.137 4.137 7 C 0.128 3.872 8 H 0.063 0.937 9 C 0.009 3.991 10 H 0.040 0.960 11 C -0.135 4.135 12 C -0.558 4.558 13 H -0.006 1.006 14 C -0.037 4.037 15 N -0.947 5.947 16 Si 1.087 2.913 17 H -0.296 1.296 18 H -0.255 1.255 19 H -0.253 1.253 20 H 0.106 0.894 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.017 0.983 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -16.137 -3.050 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.295 3.705 3 O -0.461 6.461 4 N -0.384 5.384 5 C -0.014 4.014 6 C -0.174 4.174 7 C 0.025 3.975 8 H 0.081 0.919 9 C -0.011 4.011 10 H 0.058 0.942 11 C -0.192 4.192 12 C -0.596 4.596 13 H 0.013 0.987 14 C -0.232 4.232 15 N -0.584 5.584 16 Si 0.908 3.092 17 H -0.223 1.223 18 H -0.179 1.179 19 H -0.178 1.178 20 H 0.125 0.875 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.115 0.885 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.997 -14.891 -3.972 17.846 hybrid contribution -1.152 0.638 1.661 2.120 sum -10.149 -14.253 -2.311 17.649 Atomic orbital electron populations 1.21768 0.88075 1.05893 1.05141 1.21322 0.91638 0.81915 0.75657 1.90892 1.71662 1.32637 1.50868 1.50107 1.09490 1.06397 1.72358 1.23156 0.99112 0.77323 1.01809 1.23535 0.96615 0.96208 1.01085 1.22763 0.83206 0.93348 0.98231 0.91856 1.19120 0.94447 0.94110 0.93400 0.94244 1.22107 1.00403 0.99018 0.97682 1.21902 1.26446 1.10308 1.00993 0.98715 1.27324 1.00351 0.92595 1.02950 1.70946 1.39225 1.17090 1.31178 0.83537 0.75115 0.75983 0.74539 1.22255 1.17911 1.17773 0.87549 0.88782 0.88685 0.88294 0.87617 0.88473 0.86750 0.92658 0.94024 0.96416 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 10.36 71.23 0.74 -3.09 16 2 C 0.50 20.39 6.63 87.66 0.58 20.97 16 3 O -0.58 -32.56 14.26 -3.03 -0.04 -32.60 16 4 N -0.65 -22.83 3.00 -833.07 -2.50 -25.33 16 5 C 0.11 2.21 7.99 83.22 0.67 2.88 16 6 C -0.14 -3.21 7.86 30.96 0.24 -2.97 16 7 C 0.13 4.93 3.76 41.79 0.16 5.08 16 8 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 9 C 0.01 0.42 1.81 -11.54 -0.02 0.40 16 10 H 0.04 1.81 6.72 -2.38 -0.02 1.79 16 11 C -0.13 -6.31 8.21 71.98 0.59 -5.72 16 12 C -0.56 -34.87 7.19 25.60 0.18 -34.69 16 13 H -0.01 -0.40 7.85 -2.91 -0.02 -0.43 16 14 C -0.04 -2.38 5.20 84.65 0.44 -1.94 16 15 N -0.95 -66.64 13.70 21.45 0.29 -66.35 16 16 Si 1.09 54.07 26.44 68.60 1.81 55.89 16 17 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 18 H -0.25 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.25 -11.38 6.13 99.48 0.61 -10.77 16 20 H 0.11 1.83 7.31 -2.39 -0.02 1.82 16 21 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 23 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.11 1.49 7.95 -2.39 -0.02 1.47 16 25 H 0.10 2.23 6.76 -2.39 -0.02 2.22 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 2.07 6.88 -2.39 -0.02 2.05 16 28 H 0.04 2.08 4.20 -2.39 -0.01 2.07 16 29 H 0.02 0.87 5.45 -2.39 -0.01 0.86 16 30 H 0.24 17.79 8.73 -92.70 -0.81 16.98 16 Total: -1.00 -87.71 239.32 4.13 -83.58 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.99 Total: 3.88 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.58 Total: -19.07 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.21 Total: -91.68 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.04 Total: -32.60 kcal Atomic # 14 Polarization: 54.07 SS G_CDS: 1.81 Total: 55.89 kcal Total: -87.71 4.13 -83.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.844 kcal (2) G-P(sol) polarization free energy of solvation -87.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds