Wall clock time and date at job start Mon Mar 30 2020 02:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 120.00250 * 2 1 4 4 N 1.34772 * 120.00088 * 180.02562 * 2 1 3 5 5 C 1.47582 * 134.49206 * 359.97438 * 4 2 1 6 6 C 1.53946 * 86.11713 * 204.63937 * 5 4 2 7 7 C 1.47584 * 134.49579 * 180.02562 * 4 2 1 8 8 H 1.09002 * 113.86936 * 269.67111 * 7 4 2 9 9 C 1.52999 * 113.76771 * 41.05258 * 7 4 2 10 10 H 1.08999 * 109.47208 * 36.50115 * 9 7 4 11 11 C 1.53001 * 109.47084 * 156.49605 * 9 7 4 12 12 C 1.50696 * 109.47518 * 276.49529 * 9 7 4 13 13 H 1.08003 * 119.99999 * 354.35793 * 12 9 7 14 14 C 1.37873 * 120.00167 * 174.35014 * 12 9 7 15 15 N 1.31512 * 120.00130 * 156.52108 * 14 12 9 16 16 Si 1.86803 * 120.00106 * 336.52162 * 14 12 9 17 17 H 1.48502 * 109.47309 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47068 * 300.00134 * 16 14 12 19 19 H 1.48500 * 109.47083 * 59.99455 * 16 14 12 20 20 H 1.08998 * 109.47024 * 240.00401 * 1 2 3 21 21 H 1.09006 * 109.47149 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47491 * 119.99603 * 1 2 3 23 23 H 1.08991 * 113.77535 * 90.33737 * 5 4 2 24 24 H 1.09004 * 113.86879 * 318.94986 * 5 4 2 25 25 H 1.08994 * 113.74351 * 222.04215 * 6 5 4 26 26 H 1.09008 * 113.84120 * 90.75251 * 6 5 4 27 27 H 1.08994 * 109.47265 * 172.98745 * 11 9 7 28 28 H 1.09002 * 109.47128 * 292.99496 * 11 9 7 29 29 H 1.09001 * 109.47164 * 52.98772 * 11 9 7 30 30 H 0.97001 * 119.99849 * 354.93570 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.7863 -2.5892 -0.0007 6 6 3.1596 -2.8622 0.6391 7 6 3.6097 -1.5365 -0.0002 8 1 4.0357 -1.6518 -0.9969 9 6 4.4706 -0.6692 0.9203 10 1 3.9052 -0.4200 1.8183 11 6 5.7345 -1.4382 1.3105 12 6 4.8556 0.5980 0.2013 13 1 4.5978 0.7280 -0.8394 14 6 5.5368 1.5915 0.8721 15 7 6.2663 2.4564 0.2018 16 14 5.4235 1.7090 2.7329 17 1 6.2407 2.8547 3.2073 18 1 4.0073 1.9135 3.1307 19 1 5.9316 0.4527 3.3401 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 1.6741 -3.0140 -0.9981 24 1 0.9442 -2.8134 0.6542 25 1 3.6656 -3.7389 0.2348 26 1 3.1498 -2.8422 1.7289 27 1 6.4050 -0.7793 1.8621 28 1 5.4638 -2.2882 1.9368 29 1 6.2351 -1.7951 0.4104 30 1 6.3848 2.3522 -0.7553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:38 Heat of formation + Delta-G solvation = -5.571176 kcal Electronic energy + Delta-G solvation = -13101.553169 eV Core-core repulsion = 10898.129095 eV Total energy + Delta-G solvation = -2203.424075 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.67485 -36.97435 -33.76697 -31.13666 -30.03114 -27.86601 -25.19835 -24.28669 -21.48941 -19.96352 -18.05967 -17.21436 -16.13164 -15.14267 -15.08651 -13.96918 -13.51505 -13.06227 -12.66306 -12.53785 -12.31324 -11.97844 -11.64953 -11.54466 -11.37311 -10.93686 -10.74439 -10.32034 -10.02723 -9.64995 -9.46466 -8.82876 -8.66245 -7.94878 -7.90021 -6.16976 -3.68532 3.40152 3.51300 3.52860 3.63288 3.78133 4.74666 4.88613 5.00723 5.33040 5.47495 5.50634 5.53145 5.68747 5.73997 5.90696 6.02645 6.04196 6.28446 6.45215 6.47694 6.60361 6.90862 6.92579 7.31550 7.65196 8.34206 8.51528 8.70087 9.02007 9.20718 9.91514 11.20844 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.015003 C = 0.012450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.506715 B = 1865.903169 C = 2248.428664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.495 6.495 4 N -0.643 5.643 5 C 0.098 3.902 6 C -0.157 4.157 7 C 0.161 3.839 8 H 0.078 0.922 9 C 0.016 3.984 10 H 0.021 0.979 11 C -0.139 4.139 12 C -0.563 4.563 13 H 0.054 0.946 14 C 0.035 3.965 15 N -0.912 5.912 16 Si 1.036 2.964 17 H -0.290 1.290 18 H -0.288 1.288 19 H -0.282 1.282 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 -12.149 1.224 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.367 6.367 4 N -0.381 5.381 5 C -0.025 4.025 6 C -0.195 4.195 7 C 0.059 3.941 8 H 0.096 0.904 9 C -0.004 4.004 10 H 0.039 0.961 11 C -0.197 4.197 12 C -0.600 4.600 13 H 0.072 0.928 14 C -0.168 4.168 15 N -0.547 5.547 16 Si 0.865 3.135 17 H -0.216 1.216 18 H -0.214 1.214 19 H -0.208 1.208 20 H 0.095 0.905 21 H 0.104 0.896 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.904 -10.411 2.517 13.929 hybrid contribution -0.725 -0.983 -1.414 1.868 sum -9.629 -11.394 1.103 14.958 Atomic orbital electron populations 1.21873 0.93344 1.04404 1.02962 1.20336 0.89349 0.82964 0.77518 1.90934 1.69668 1.29585 1.46513 1.50207 1.09206 1.04140 1.74574 1.23038 0.98141 0.81477 0.99872 1.23664 0.95763 0.98712 1.01378 1.22800 0.82026 0.90254 0.99014 0.90408 1.19110 0.91451 0.95153 0.94688 0.96091 1.22085 0.99897 0.98316 0.99413 1.21625 1.38411 1.01446 0.98550 0.92817 1.25494 0.92402 0.93216 1.05725 1.70826 1.34290 1.39565 1.10063 0.84173 0.76393 0.75854 0.77035 1.21575 1.21435 1.20838 0.90477 0.89629 0.90571 0.90733 0.91014 0.90682 0.89434 0.92987 0.95932 0.93918 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.07 36.00 0.36 -1.99 16 2 C 0.51 10.60 8.07 -10.99 -0.09 10.51 16 3 O -0.49 -13.41 15.47 5.55 0.09 -13.32 16 4 N -0.64 -12.16 3.49 -171.22 -0.60 -12.76 16 5 C 0.10 1.28 8.61 -2.97 -0.03 1.25 16 6 C -0.16 -2.27 7.05 -25.83 -0.18 -2.45 16 7 C 0.16 3.25 3.60 -66.89 -0.24 3.01 16 8 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 9 C 0.02 0.38 1.54 -91.77 -0.14 0.24 16 10 H 0.02 0.55 6.71 -51.93 -0.35 0.20 16 11 C -0.14 -3.04 8.60 37.16 0.32 -2.72 16 12 C -0.56 -16.81 6.76 -34.44 -0.23 -17.04 16 13 H 0.05 1.79 7.95 -52.48 -0.42 1.37 16 14 C 0.04 1.09 5.19 -17.82 -0.09 1.00 16 15 N -0.91 -30.00 13.70 55.43 0.76 -29.24 16 16 Si 1.04 27.62 26.45 -169.99 -4.50 23.13 16 17 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 18 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 19 H -0.28 -6.83 6.18 56.52 0.35 -6.48 16 20 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.08 1.21 8.12 -51.93 -0.42 0.78 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.27 8.08 -51.92 -0.42 0.85 16 27 H 0.05 1.23 5.52 -51.93 -0.29 0.94 16 28 H 0.02 0.41 7.70 -51.93 -0.40 0.01 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.26 8.68 8.73 -40.82 -0.36 8.32 16 LS Contribution 248.78 15.07 3.75 3.75 Total: -1.00 -36.10 248.78 -5.28 -41.38 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.46 Total: -4.74 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.32 Total: -8.19 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.16 Total: -42.00 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 27.62 SS G_CDS: -4.50 Total: 23.13 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -36.10 -5.28 -41.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.805 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds