Wall clock time and date at job start Mon Mar 30 2020 02:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 120.00250 * 2 1 4 4 N 1.34772 * 120.00088 * 180.02562 * 2 1 3 5 5 C 1.47582 * 134.49206 * 359.97438 * 4 2 1 6 6 C 1.53946 * 86.11713 * 204.63937 * 5 4 2 7 7 C 1.47584 * 134.49579 * 180.02562 * 4 2 1 8 8 H 1.09002 * 113.86936 * 269.67111 * 7 4 2 9 9 C 1.52999 * 113.76771 * 41.05258 * 7 4 2 10 10 H 1.08999 * 109.47208 * 36.50115 * 9 7 4 11 11 C 1.53001 * 109.47084 * 156.49605 * 9 7 4 12 12 C 1.50696 * 109.47518 * 276.49529 * 9 7 4 13 13 H 1.08003 * 119.99999 * 354.35793 * 12 9 7 14 14 C 1.37873 * 120.00167 * 174.35014 * 12 9 7 15 15 N 1.31512 * 120.00130 * 156.52108 * 14 12 9 16 16 Si 1.86803 * 120.00106 * 336.52162 * 14 12 9 17 17 H 1.48502 * 109.47309 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47068 * 300.00134 * 16 14 12 19 19 H 1.48500 * 109.47083 * 59.99455 * 16 14 12 20 20 H 1.08998 * 109.47024 * 240.00401 * 1 2 3 21 21 H 1.09006 * 109.47149 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47491 * 119.99603 * 1 2 3 23 23 H 1.08991 * 113.77535 * 90.33737 * 5 4 2 24 24 H 1.09004 * 113.86879 * 318.94986 * 5 4 2 25 25 H 1.08994 * 113.74351 * 222.04215 * 6 5 4 26 26 H 1.09008 * 113.84120 * 90.75251 * 6 5 4 27 27 H 1.08994 * 109.47265 * 172.98745 * 11 9 7 28 28 H 1.09002 * 109.47128 * 292.99496 * 11 9 7 29 29 H 1.09001 * 109.47164 * 52.98772 * 11 9 7 30 30 H 0.97001 * 119.99849 * 354.93570 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.7863 -2.5892 -0.0007 6 6 3.1596 -2.8622 0.6391 7 6 3.6097 -1.5365 -0.0002 8 1 4.0357 -1.6518 -0.9969 9 6 4.4706 -0.6692 0.9203 10 1 3.9052 -0.4200 1.8183 11 6 5.7345 -1.4382 1.3105 12 6 4.8556 0.5980 0.2013 13 1 4.5978 0.7280 -0.8394 14 6 5.5368 1.5915 0.8721 15 7 6.2663 2.4564 0.2018 16 14 5.4235 1.7090 2.7329 17 1 6.2407 2.8547 3.2073 18 1 4.0073 1.9135 3.1307 19 1 5.9316 0.4527 3.3401 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 1.6741 -3.0140 -0.9981 24 1 0.9442 -2.8134 0.6542 25 1 3.6656 -3.7389 0.2348 26 1 3.1498 -2.8422 1.7289 27 1 6.4050 -0.7793 1.8621 28 1 5.4638 -2.2882 1.9368 29 1 6.2351 -1.7951 0.4104 30 1 6.3848 2.3522 -0.7553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:38 Heat of formation + Delta-G solvation = -33.304726 kcal Electronic energy + Delta-G solvation = -13102.755786 eV Core-core repulsion = 10898.129095 eV Total energy + Delta-G solvation = -2204.626692 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12513 -38.59943 -35.81769 -33.21371 -31.51651 -29.11316 -26.80076 -26.27296 -22.83453 -21.77348 -19.72601 -19.33669 -17.65549 -16.65434 -16.56383 -15.69818 -15.24838 -14.96991 -14.33792 -14.15901 -13.71856 -13.52717 -13.13785 -12.98147 -12.87012 -12.55955 -12.34927 -12.20139 -11.86001 -11.64483 -11.19960 -10.97602 -10.43658 -10.29424 -9.45311 -8.62083 -6.12858 1.35943 1.49036 1.66236 1.89653 2.16324 2.51831 3.14385 3.66956 3.76952 4.18881 4.34499 4.47035 4.52225 4.58005 4.64578 4.68821 4.76207 4.89227 4.95518 5.04569 5.06543 5.24929 5.37325 5.48382 5.83142 6.12006 6.21821 6.69380 7.07013 7.50167 7.55060 8.73232 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.015003 C = 0.012450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.506715 B = 1865.903169 C = 2248.428664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.492 3.508 3 O -0.583 6.583 4 N -0.652 5.652 5 C 0.109 3.891 6 C -0.134 4.134 7 C 0.135 3.865 8 H 0.060 0.940 9 C 0.012 3.988 10 H 0.010 0.990 11 C -0.132 4.132 12 C -0.550 4.550 13 H -0.002 1.002 14 C -0.027 4.027 15 N -0.950 5.950 16 Si 1.079 2.921 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.236 1.236 20 H 0.109 0.891 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 -15.816 2.925 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.283 3.717 3 O -0.462 6.462 4 N -0.389 5.389 5 C -0.012 4.012 6 C -0.172 4.172 7 C 0.031 3.969 8 H 0.078 0.922 9 C -0.007 4.007 10 H 0.028 0.972 11 C -0.190 4.190 12 C -0.588 4.588 13 H 0.017 0.983 14 C -0.223 4.223 15 N -0.588 5.588 16 Si 0.902 3.098 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.159 1.159 20 H 0.128 0.872 21 H 0.098 0.902 22 H 0.126 0.874 23 H 0.119 0.881 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.773 -14.183 4.209 18.301 hybrid contribution -0.207 0.104 -2.079 2.091 sum -10.980 -14.079 2.130 17.981 Atomic orbital electron populations 1.21808 0.87979 1.05138 1.05940 1.21612 0.91988 0.82333 0.75794 1.90891 1.71912 1.32736 1.50700 1.50547 1.09051 1.06385 1.72914 1.23388 0.98718 0.76930 1.02125 1.23578 0.96108 0.95907 1.01595 1.22822 0.82561 0.93498 0.97984 0.92174 1.19092 0.93489 0.93757 0.94384 0.97227 1.21929 0.97838 0.99073 1.00160 1.21773 1.36644 1.04120 0.96236 0.98349 1.26943 0.92223 0.93089 1.10042 1.70955 1.37341 1.41512 1.09011 0.83626 0.76226 0.77910 0.72003 1.21676 1.21757 1.15929 0.87205 0.90235 0.87395 0.88087 0.87188 0.87286 0.88735 0.95018 0.91195 0.93680 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 10.07 71.23 0.72 -3.11 16 2 C 0.49 20.24 8.07 87.66 0.71 20.95 16 3 O -0.58 -33.20 15.47 -3.04 -0.05 -33.25 16 4 N -0.65 -23.36 3.49 -814.01 -2.84 -26.20 16 5 C 0.11 2.24 8.61 86.48 0.74 2.98 16 6 C -0.13 -3.19 7.05 31.24 0.22 -2.97 16 7 C 0.13 5.25 3.60 45.08 0.16 5.41 16 8 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 9 C 0.01 0.60 1.54 -11.54 -0.02 0.58 16 10 H 0.01 0.50 6.71 -2.39 -0.02 0.48 16 11 C -0.13 -5.48 8.60 71.98 0.62 -4.87 16 12 C -0.55 -34.42 6.76 25.60 0.17 -34.25 16 13 H 0.00 -0.13 7.95 -2.91 -0.02 -0.16 16 14 C -0.03 -1.77 5.19 84.65 0.44 -1.33 16 15 N -0.95 -65.96 13.70 21.45 0.29 -65.66 16 16 Si 1.08 56.69 26.45 68.60 1.81 58.50 16 17 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 18 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 19 H -0.24 -10.55 6.18 99.48 0.61 -9.93 16 20 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 21 H 0.08 2.14 8.12 -2.38 -0.02 2.12 16 22 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 2.18 8.08 -2.38 -0.02 2.16 16 27 H 0.03 1.42 5.52 -2.39 -0.01 1.40 16 28 H 0.07 2.25 7.70 -2.39 -0.02 2.23 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.25 17.37 8.73 -92.71 -0.81 16.56 16 Total: -1.00 -87.91 248.78 3.96 -83.95 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 0.97 Total: -0.75 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.77 Total: -16.59 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -2.55 Total: -91.86 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.05 Total: -33.25 kcal Atomic # 14 Polarization: 56.69 SS G_CDS: 1.81 Total: 58.50 kcal Total: -87.91 3.96 -83.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.647 kcal (2) G-P(sol) polarization free energy of solvation -87.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds