Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00379 * 2 1 4 4 N 1.34780 * 119.99722 * 180.02562 * 2 1 3 5 5 C 1.47066 * 136.05524 * 359.97438 * 4 2 1 6 6 C 1.53503 * 87.98596 * 207.08426 * 5 4 2 7 7 C 1.47060 * 136.05896 * 179.97438 * 4 2 1 8 8 H 1.09006 * 113.47077 * 267.69492 * 7 4 2 9 9 C 1.53001 * 113.46708 * 38.07276 * 7 4 2 10 10 H 1.09000 * 109.46970 * 160.49924 * 9 7 4 11 11 C 1.53000 * 109.47097 * 40.50072 * 9 7 4 12 12 C 1.50696 * 109.47096 * 280.49234 * 9 7 4 13 13 H 1.08001 * 120.00273 * 0.02562 * 12 9 7 14 14 C 1.37880 * 119.99975 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99803 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00268 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47418 * 119.99913 * 16 14 12 19 19 H 1.48500 * 109.47352 * 240.00367 * 16 14 12 20 20 H 1.09001 * 109.47752 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46587 * 299.99986 * 1 2 3 22 22 H 1.08998 * 109.47089 * 59.99590 * 1 2 3 23 23 H 1.09000 * 113.46827 * 321.86030 * 5 4 2 24 24 H 1.09003 * 113.47151 * 92.30820 * 5 4 2 25 25 H 1.08999 * 114.20584 * 87.51845 * 6 5 4 26 26 H 1.08993 * 114.21026 * 220.34353 * 6 5 4 27 27 H 1.08994 * 109.47176 * 59.99455 * 11 9 7 28 28 H 1.08997 * 109.46878 * 180.02562 * 11 9 7 29 29 H 1.09007 * 109.46454 * 299.99885 * 11 9 7 30 30 H 0.97005 * 119.99799 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.8264 -2.5946 -0.0007 6 6 3.1652 -2.8716 0.6972 7 6 3.5940 -1.5741 -0.0012 8 1 3.9997 -1.7327 -1.0004 9 6 4.4855 -0.6812 0.8642 10 1 5.4086 -1.2101 1.1014 11 6 3.7515 -0.3301 2.1599 12 6 4.8106 0.5837 0.1122 13 1 4.4200 0.7357 -0.8832 14 6 5.6057 1.5474 0.6954 15 7 6.0809 1.3624 1.9076 16 14 6.0081 3.1156 -0.2364 17 1 5.3559 3.0801 -1.5701 18 1 5.5086 4.2871 0.5273 19 1 7.4791 3.2265 -0.4070 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 0.9588 -2.8264 0.6171 24 1 1.7604 -3.0254 -0.9998 25 1 3.1255 -2.8013 1.7842 26 1 3.6797 -3.7633 0.3393 27 1 3.5165 -1.2450 2.7036 28 1 4.3865 0.3064 2.7761 29 1 2.8284 0.1988 1.9225 30 1 6.6407 2.0403 2.3178 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = 4.009895 kcal Electronic energy + Delta-G solvation = -13243.210722 eV Core-core repulsion = 11040.202114 eV Total energy + Delta-G solvation = -2203.008608 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83878 -36.92247 -33.56129 -30.73731 -29.68537 -27.80009 -25.13565 -24.50024 -21.63473 -20.19582 -17.53730 -16.25421 -15.83189 -15.46716 -14.78777 -14.26367 -13.75262 -12.73262 -12.58674 -12.52567 -12.06265 -11.79958 -11.39617 -11.29536 -11.08707 -10.77545 -10.53107 -10.25813 -9.94897 -9.78775 -9.07180 -8.69731 -8.56790 -8.09107 -7.80727 -5.73009 -3.71683 3.47408 3.49345 3.54559 3.62120 3.64384 4.68891 4.97674 5.10656 5.45606 5.47886 5.60603 5.65468 5.77466 5.88456 6.03905 6.08647 6.16783 6.51114 6.63103 6.81044 7.10774 7.31767 7.56354 7.91918 8.12802 8.33272 8.64926 8.68343 9.10254 9.25740 9.88880 11.34359 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.013963 C = 0.011795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.239051 B = 2004.869965 C = 2373.236233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.521 3.479 3 O -0.499 6.499 4 N -0.636 5.636 5 C 0.098 3.902 6 C -0.162 4.162 7 C 0.144 3.856 8 H 0.075 0.925 9 C 0.039 3.961 10 H 0.034 0.966 11 C -0.131 4.131 12 C -0.467 4.467 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.903 5.903 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.290 1.290 20 H 0.065 0.935 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.076 0.924 27 H -0.001 1.001 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -8.615 -2.591 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.310 3.690 3 O -0.372 6.372 4 N -0.374 5.374 5 C -0.026 4.026 6 C -0.199 4.199 7 C 0.041 3.959 8 H 0.092 0.908 9 C 0.021 3.979 10 H 0.052 0.948 11 C -0.188 4.188 12 C -0.505 4.505 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.545 5.545 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.217 1.217 20 H 0.084 0.916 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.018 0.982 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.956 -7.695 -2.482 12.066 hybrid contribution 0.056 0.861 -0.497 0.996 sum -8.899 -6.834 -2.979 11.609 Atomic orbital electron populations 1.21814 0.93505 1.02965 1.04201 1.20060 0.89013 0.82603 0.77357 1.90895 1.69431 1.29590 1.47250 1.49764 1.09824 1.04038 1.73800 1.22835 0.98335 0.81827 0.99595 1.23574 0.96299 0.98606 1.01459 1.22852 0.83102 0.91146 0.98762 0.90756 1.18826 0.92682 0.94230 0.92189 0.94831 1.21800 1.00279 0.97738 0.99015 1.20996 1.27137 1.01482 1.00930 0.92918 1.24838 0.96509 0.97997 0.94954 1.69901 1.35876 1.34627 1.14064 0.86542 0.77002 0.84197 0.80206 1.20088 1.21456 1.21698 0.91627 0.89635 0.89704 0.91608 0.90926 0.88761 0.90545 0.98189 0.90380 0.94697 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.36 36.01 0.37 -1.98 16 2 C 0.52 10.71 6.76 -10.98 -0.07 10.63 16 3 O -0.50 -13.08 13.93 5.56 0.08 -13.00 16 4 N -0.64 -12.12 3.02 -177.48 -0.54 -12.65 16 5 C 0.10 1.33 7.99 -8.51 -0.07 1.27 16 6 C -0.16 -2.47 7.83 -26.23 -0.21 -2.68 16 7 C 0.14 2.94 3.77 -72.42 -0.27 2.67 16 8 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 9 C 0.04 1.02 2.27 -91.77 -0.21 0.81 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 11 C -0.13 -3.37 8.31 37.16 0.31 -3.06 16 12 C -0.47 -13.74 6.51 -34.44 -0.22 -13.97 16 13 H 0.05 1.62 7.37 -52.49 -0.39 1.23 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 15 N -0.90 -27.71 11.32 55.43 0.63 -27.08 16 16 Si 0.89 23.81 29.54 -169.99 -5.02 18.79 16 17 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 19 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 20 H 0.06 0.75 7.31 -51.93 -0.38 0.37 16 21 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.52 6.30 -51.93 -0.33 1.19 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.00 -0.02 6.37 -51.93 -0.33 -0.35 16 28 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 29 H 0.03 0.92 5.04 -51.93 -0.26 0.66 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 241.79 15.07 3.64 3.64 Total: -1.00 -34.28 241.79 -5.76 -40.04 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -4.08 Total: -5.01 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.47 Total: -4.73 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.09 Total: -39.73 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.79 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -34.28 -5.76 -40.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.045 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds