Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00379 * 2 1 4 4 N 1.34780 * 119.99722 * 180.02562 * 2 1 3 5 5 C 1.47066 * 136.05524 * 359.97438 * 4 2 1 6 6 C 1.53503 * 87.98596 * 207.08426 * 5 4 2 7 7 C 1.47060 * 136.05896 * 179.97438 * 4 2 1 8 8 H 1.09006 * 113.47077 * 267.69492 * 7 4 2 9 9 C 1.53001 * 113.46708 * 38.07276 * 7 4 2 10 10 H 1.09000 * 109.46970 * 160.49924 * 9 7 4 11 11 C 1.53000 * 109.47097 * 40.50072 * 9 7 4 12 12 C 1.50696 * 109.47096 * 280.49234 * 9 7 4 13 13 H 1.08001 * 120.00273 * 0.02562 * 12 9 7 14 14 C 1.37880 * 119.99975 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99803 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00268 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47418 * 119.99913 * 16 14 12 19 19 H 1.48500 * 109.47352 * 240.00367 * 16 14 12 20 20 H 1.09001 * 109.47752 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46587 * 299.99986 * 1 2 3 22 22 H 1.08998 * 109.47089 * 59.99590 * 1 2 3 23 23 H 1.09000 * 113.46827 * 321.86030 * 5 4 2 24 24 H 1.09003 * 113.47151 * 92.30820 * 5 4 2 25 25 H 1.08999 * 114.20584 * 87.51845 * 6 5 4 26 26 H 1.08993 * 114.21026 * 220.34353 * 6 5 4 27 27 H 1.08994 * 109.47176 * 59.99455 * 11 9 7 28 28 H 1.08997 * 109.46878 * 180.02562 * 11 9 7 29 29 H 1.09007 * 109.46454 * 299.99885 * 11 9 7 30 30 H 0.97005 * 119.99799 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.8264 -2.5946 -0.0007 6 6 3.1652 -2.8716 0.6972 7 6 3.5940 -1.5741 -0.0012 8 1 3.9997 -1.7327 -1.0004 9 6 4.4855 -0.6812 0.8642 10 1 5.4086 -1.2101 1.1014 11 6 3.7515 -0.3301 2.1599 12 6 4.8106 0.5837 0.1122 13 1 4.4200 0.7357 -0.8832 14 6 5.6057 1.5474 0.6954 15 7 6.0809 1.3624 1.9076 16 14 6.0081 3.1156 -0.2364 17 1 5.3559 3.0801 -1.5701 18 1 5.5086 4.2871 0.5273 19 1 7.4791 3.2265 -0.4070 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 0.9588 -2.8264 0.6171 24 1 1.7604 -3.0254 -0.9998 25 1 3.1255 -2.8013 1.7842 26 1 3.6797 -3.7633 0.3393 27 1 3.5165 -1.2450 2.7036 28 1 4.3865 0.3064 2.7761 29 1 2.8284 0.1988 1.9225 30 1 6.6407 2.0403 2.3178 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -20.104432 kcal Electronic energy + Delta-G solvation = -13244.256398 eV Core-core repulsion = 11040.202114 eV Total energy + Delta-G solvation = -2204.054284 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.31375 -38.51571 -35.66553 -32.60018 -31.34196 -29.05036 -27.26969 -26.20546 -23.02900 -21.95832 -19.06905 -18.31920 -17.44376 -17.08492 -16.55768 -16.05070 -15.34196 -14.59995 -14.26243 -13.83835 -13.41991 -13.22405 -13.10962 -13.02369 -12.82004 -12.66875 -12.33087 -12.10478 -12.03936 -11.82414 -10.92162 -10.66199 -10.38992 -10.30305 -9.32458 -8.02425 -6.05858 1.30441 1.34361 1.45788 1.99965 2.27379 2.46835 3.27257 3.71396 3.86629 4.31125 4.41358 4.57444 4.65282 4.68765 4.70738 4.79003 4.91127 5.03093 5.05993 5.16459 5.25577 5.42039 5.61755 5.68930 5.97897 6.14129 6.46542 6.95991 7.22545 7.56048 7.60421 9.03128 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.013963 C = 0.011795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.239051 B = 2004.869965 C = 2373.236233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.504 3.496 3 O -0.575 6.575 4 N -0.645 5.645 5 C 0.110 3.890 6 C -0.143 4.143 7 C 0.125 3.875 8 H 0.071 0.929 9 C 0.034 3.966 10 H 0.011 0.989 11 C -0.114 4.114 12 C -0.469 4.469 13 H 0.030 0.970 14 C 0.003 3.997 15 N -0.927 5.927 16 Si 0.943 3.057 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.274 1.274 20 H 0.102 0.898 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.023 0.977 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 -10.614 -3.128 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.295 3.705 3 O -0.454 6.454 4 N -0.381 5.381 5 C -0.011 4.011 6 C -0.181 4.181 7 C 0.022 3.978 8 H 0.089 0.911 9 C 0.015 3.985 10 H 0.029 0.971 11 C -0.172 4.172 12 C -0.508 4.508 13 H 0.049 0.951 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.771 3.229 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.200 1.200 20 H 0.121 0.879 21 H 0.110 0.890 22 H 0.116 0.884 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.728 -9.756 -3.025 14.813 hybrid contribution 0.606 1.429 -0.344 1.590 sum -10.121 -8.327 -3.369 13.533 Atomic orbital electron populations 1.21765 0.88409 1.05673 1.05089 1.21256 0.91462 0.81946 0.75805 1.90849 1.71468 1.32322 1.50769 1.50026 1.09335 1.06249 1.72509 1.23095 0.98558 0.77743 1.01721 1.23491 0.97202 0.96653 1.00752 1.22846 0.83459 0.93171 0.98363 0.91072 1.18775 0.93109 0.93668 0.92909 0.97105 1.21561 0.98724 0.98209 0.98716 1.21205 1.26244 1.03131 1.00225 0.95134 1.25527 0.97068 1.00755 0.95902 1.70012 1.36600 1.35395 1.14967 0.85737 0.77500 0.81002 0.78698 1.20619 1.21679 1.19958 0.87930 0.89027 0.88445 0.88123 0.87836 0.89506 0.87203 0.95017 0.94191 0.95819 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 10.36 71.24 0.74 -3.09 16 2 C 0.50 20.20 6.76 87.66 0.59 20.80 16 3 O -0.58 -30.97 13.93 -3.03 -0.04 -31.01 16 4 N -0.64 -23.13 3.02 -833.80 -2.51 -25.65 16 5 C 0.11 2.44 7.99 83.18 0.66 3.10 16 6 C -0.14 -3.84 7.83 30.92 0.24 -3.60 16 7 C 0.13 4.98 3.77 41.78 0.16 5.13 16 8 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 9 C 0.03 1.79 2.27 -11.54 -0.03 1.77 16 10 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 11 C -0.11 -5.97 8.31 71.98 0.60 -5.37 16 12 C -0.47 -28.54 6.51 25.60 0.17 -28.37 16 13 H 0.03 1.95 7.37 -2.91 -0.02 1.93 16 14 C 0.00 0.18 5.30 84.66 0.45 0.63 16 15 N -0.93 -58.57 11.32 21.45 0.24 -58.33 16 16 Si 0.94 50.26 29.54 68.60 2.03 52.29 16 17 H -0.28 -15.05 7.11 99.48 0.71 -14.34 16 18 H -0.29 -15.46 7.11 99.48 0.71 -14.76 16 19 H -0.27 -13.76 7.11 99.48 0.71 -13.05 16 20 H 0.10 1.82 7.31 -2.39 -0.02 1.80 16 21 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.10 1.62 7.96 -2.39 -0.02 1.61 16 24 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.09 2.48 6.30 -2.39 -0.02 2.47 16 26 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.03 1.39 6.37 -2.39 -0.02 1.38 16 28 H 0.04 2.37 6.07 -2.39 -0.01 2.36 16 29 H 0.02 1.25 5.04 -2.38 -0.01 1.24 16 30 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -79.09 241.79 4.41 -74.67 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 1.12 Total: -2.98 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 3.58 Total: -9.00 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.27 Total: -83.98 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.04 Total: -31.01 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.03 Total: 52.29 kcal Total: -79.09 4.41 -74.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.570 kcal (2) G-P(sol) polarization free energy of solvation -79.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds