Wall clock time and date at job start Mon Mar 30 2020 02:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00597 * 2 1 4 4 N 1.34780 * 119.99850 * 179.97438 * 2 1 3 5 5 C 1.47060 * 136.05896 * 359.95560 * 4 2 1 6 6 C 1.53498 * 87.98968 * 152.91492 * 5 4 2 7 7 C 1.47066 * 136.05524 * 180.02562 * 4 2 1 8 8 H 1.09003 * 113.47151 * 92.30820 * 7 4 2 9 9 C 1.53000 * 113.46959 * 321.86550 * 7 4 2 10 10 C 1.53000 * 109.47173 * 84.50784 * 9 7 4 11 11 C 1.50698 * 109.46989 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00193 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99698 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47335 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47256 * 120.00122 * 15 13 11 18 18 H 1.48497 * 109.47222 * 240.00176 * 15 13 11 19 19 H 1.08998 * 109.47320 * 270.00684 * 1 2 3 20 20 H 1.09004 * 109.46656 * 30.01125 * 1 2 3 21 21 H 1.08997 * 109.47058 * 150.00099 * 1 2 3 22 22 H 1.09006 * 113.47077 * 267.69492 * 5 4 2 23 23 H 1.09003 * 113.47044 * 38.07057 * 5 4 2 24 24 H 1.08999 * 114.20480 * 272.48146 * 6 5 4 25 25 H 1.08993 * 114.21161 * 139.65606 * 6 5 4 26 26 H 1.09002 * 109.47348 * 204.50995 * 9 7 4 27 27 H 1.09006 * 109.46804 * 324.50579 * 9 7 4 28 28 H 1.08997 * 109.46640 * 299.99830 * 10 9 7 29 29 H 1.08990 * 109.47093 * 60.00035 * 10 9 7 30 30 H 0.97005 * 119.99624 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0020 6 6 3.1646 -2.8719 -0.6972 7 6 3.5941 -1.5740 0.0012 8 1 3.9998 -1.7326 1.0004 9 6 4.4854 -0.6819 -0.8653 10 6 4.9175 0.5444 -0.0589 11 6 5.7948 1.4233 -0.9126 12 1 6.0218 1.1358 -1.9286 13 6 6.3077 2.5945 -0.3966 14 7 6.0309 2.9448 0.8405 15 14 7.3958 3.6837 -1.4545 16 1 7.5531 3.0707 -2.7979 17 1 6.7703 5.0234 -1.5925 18 1 8.7284 3.8231 -0.8144 19 1 -0.3634 0.0001 1.0276 20 1 -0.3633 0.8899 -0.5140 21 1 -0.3633 -0.8900 -0.5138 22 1 1.7616 -3.0247 1.0014 23 1 0.9576 -2.8267 -0.6138 24 1 3.1237 -2.8024 -1.7842 25 1 3.6795 -3.7634 -0.3393 26 1 5.3675 -1.2418 -1.1761 27 1 3.9302 -0.3602 -1.7465 28 1 4.0354 1.1042 0.2517 29 1 5.4726 0.2226 0.8222 30 1 6.3920 3.7687 1.2036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:06 Heat of formation + Delta-G solvation = -8.079460 kcal Electronic energy + Delta-G solvation = -12666.597532 eV Core-core repulsion = 10463.064690 eV Total energy + Delta-G solvation = -2203.532842 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.03153 -37.25776 -33.42465 -31.30848 -30.18360 -28.07709 -26.25301 -23.23116 -21.75790 -20.32696 -18.35650 -16.63326 -15.92501 -15.49057 -15.06269 -14.30473 -14.03512 -13.22169 -12.87966 -12.39518 -12.22135 -12.06322 -11.95208 -11.75325 -11.28816 -10.91075 -10.79964 -10.51904 -10.24918 -9.61609 -9.21967 -8.93183 -8.64781 -8.23098 -8.03321 -5.76798 -3.76405 3.16189 3.30019 3.42907 3.49284 3.53704 4.59951 4.63958 4.83494 5.15662 5.29518 5.43617 5.49843 5.58702 5.60331 5.69930 5.85316 5.86305 6.10390 6.15471 6.33620 6.82113 6.97097 7.34646 7.92283 8.15609 8.25239 8.32961 8.67774 8.87837 9.35368 9.83910 11.34931 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047136 B = 0.009439 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.881895 B = 2965.554683 C = 3324.406642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.521 3.479 3 O -0.502 6.502 4 N -0.646 5.646 5 C 0.100 3.900 6 C -0.157 4.157 7 C 0.134 3.866 8 H 0.085 0.915 9 C -0.111 4.111 10 C 0.002 3.998 11 C -0.510 4.510 12 H 0.049 0.951 13 C 0.054 3.946 14 N -0.894 5.894 15 Si 0.887 3.113 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.286 1.286 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.003 0.997 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.263 -12.581 -1.406 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.310 3.690 3 O -0.376 6.376 4 N -0.385 5.385 5 C -0.024 4.024 6 C -0.195 4.195 7 C 0.031 3.969 8 H 0.103 0.897 9 C -0.149 4.149 10 C -0.034 4.034 11 C -0.548 4.548 12 H 0.067 0.933 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.212 1.212 19 H 0.105 0.895 20 H 0.107 0.893 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.039 -11.621 -1.282 15.410 hybrid contribution 0.566 0.592 -0.417 0.919 sum -9.473 -11.029 -1.699 14.638 Atomic orbital electron populations 1.21815 0.92455 1.04034 1.03984 1.20337 0.89597 0.82281 0.76774 1.90873 1.69304 1.29798 1.47605 1.49909 1.09522 1.04695 1.74338 1.22858 0.98336 0.81078 1.00112 1.23515 0.96540 0.98401 1.01006 1.22844 0.83080 0.91532 0.99402 0.89684 1.21779 0.96726 0.98038 0.98308 1.19453 0.98167 0.91548 0.94272 1.21274 1.29215 1.05679 0.98646 0.93262 1.24992 0.96832 0.97760 0.94981 1.70006 1.45415 1.23720 1.14299 0.86621 0.80377 0.80808 0.80665 1.19939 1.21176 1.21219 0.89516 0.89252 0.91030 0.90365 0.91081 0.89017 0.89839 0.92597 0.93058 0.92065 0.97844 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.18 36.01 0.37 -1.68 16 2 C 0.52 9.77 8.09 -10.98 -0.09 9.68 16 3 O -0.50 -12.66 14.38 5.56 0.08 -12.58 16 4 N -0.65 -10.76 3.57 -177.44 -0.63 -11.39 16 5 C 0.10 1.10 8.26 -8.51 -0.07 1.03 16 6 C -0.16 -1.88 8.03 -26.20 -0.21 -2.09 16 7 C 0.13 2.34 3.96 -72.39 -0.29 2.05 16 8 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 9 C -0.11 -2.47 4.76 -26.73 -0.13 -2.60 16 10 C 0.00 0.07 4.86 -27.88 -0.14 -0.07 16 11 C -0.51 -15.85 9.11 -34.44 -0.31 -16.17 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.05 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -29.31 13.29 55.43 0.74 -28.57 16 15 Si 0.89 23.35 29.54 -169.99 -5.02 18.33 16 16 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 20 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 21 H 0.07 0.70 7.76 -51.93 -0.40 0.29 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 24 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.94 4.88 -51.93 -0.25 1.69 16 29 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 254.71 15.07 3.84 3.84 Total: -1.00 -37.24 254.71 -6.38 -43.62 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -4.41 Total: -5.01 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.96 Total: -8.23 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.10 Total: -39.97 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -37.24 -6.38 -43.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.538 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds