Wall clock time and date at job start Mon Mar 30 2020 02:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00597 * 2 1 4 4 N 1.34780 * 119.99850 * 179.97438 * 2 1 3 5 5 C 1.47060 * 136.05896 * 359.95560 * 4 2 1 6 6 C 1.53498 * 87.98968 * 152.91492 * 5 4 2 7 7 C 1.47066 * 136.05524 * 180.02562 * 4 2 1 8 8 H 1.09003 * 113.47151 * 92.30820 * 7 4 2 9 9 C 1.53000 * 113.46959 * 321.86550 * 7 4 2 10 10 C 1.53000 * 109.47173 * 84.50784 * 9 7 4 11 11 C 1.50698 * 109.46989 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00193 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99698 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47335 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47256 * 120.00122 * 15 13 11 18 18 H 1.48497 * 109.47222 * 240.00176 * 15 13 11 19 19 H 1.08998 * 109.47320 * 270.00684 * 1 2 3 20 20 H 1.09004 * 109.46656 * 30.01125 * 1 2 3 21 21 H 1.08997 * 109.47058 * 150.00099 * 1 2 3 22 22 H 1.09006 * 113.47077 * 267.69492 * 5 4 2 23 23 H 1.09003 * 113.47044 * 38.07057 * 5 4 2 24 24 H 1.08999 * 114.20480 * 272.48146 * 6 5 4 25 25 H 1.08993 * 114.21161 * 139.65606 * 6 5 4 26 26 H 1.09002 * 109.47348 * 204.50995 * 9 7 4 27 27 H 1.09006 * 109.46804 * 324.50579 * 9 7 4 28 28 H 1.08997 * 109.46640 * 299.99830 * 10 9 7 29 29 H 1.08990 * 109.47093 * 60.00035 * 10 9 7 30 30 H 0.97005 * 119.99624 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0020 6 6 3.1646 -2.8719 -0.6972 7 6 3.5941 -1.5740 0.0012 8 1 3.9998 -1.7326 1.0004 9 6 4.4854 -0.6819 -0.8653 10 6 4.9175 0.5444 -0.0589 11 6 5.7948 1.4233 -0.9126 12 1 6.0218 1.1358 -1.9286 13 6 6.3077 2.5945 -0.3966 14 7 6.0309 2.9448 0.8405 15 14 7.3958 3.6837 -1.4545 16 1 7.5531 3.0707 -2.7979 17 1 6.7703 5.0234 -1.5925 18 1 8.7284 3.8231 -0.8144 19 1 -0.3634 0.0001 1.0276 20 1 -0.3633 0.8899 -0.5140 21 1 -0.3633 -0.8900 -0.5138 22 1 1.7616 -3.0247 1.0014 23 1 0.9576 -2.8267 -0.6138 24 1 3.1237 -2.8024 -1.7842 25 1 3.6795 -3.7634 -0.3393 26 1 5.3675 -1.2418 -1.1761 27 1 3.9302 -0.3602 -1.7465 28 1 4.0354 1.1042 0.2517 29 1 5.4726 0.2226 0.8222 30 1 6.3920 3.7687 1.2036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:06 Heat of formation + Delta-G solvation = -35.515546 kcal Electronic energy + Delta-G solvation = -12667.787250 eV Core-core repulsion = 10463.064690 eV Total energy + Delta-G solvation = -2204.722560 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31654 -38.71338 -35.63809 -33.25312 -31.65122 -29.15765 -28.19028 -24.99393 -22.93892 -22.23660 -19.68441 -18.57783 -17.62614 -16.88378 -16.57883 -16.33021 -15.28435 -14.93238 -14.50117 -13.92852 -13.74297 -13.56724 -13.17168 -12.94188 -12.88421 -12.82696 -12.48110 -12.30314 -12.01869 -11.63883 -11.29645 -10.76661 -10.66272 -10.27416 -9.56915 -8.17292 -6.27435 1.32197 1.35745 1.48222 1.79895 2.08941 2.39377 3.14387 3.53654 3.76464 4.12338 4.27548 4.38392 4.42705 4.57395 4.63346 4.67709 4.73223 4.97494 4.97715 5.07869 5.22317 5.31277 5.41464 5.54199 5.84189 6.05581 6.28616 6.90354 7.01318 7.38639 7.44861 8.95330 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047136 B = 0.009439 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.881895 B = 2965.554683 C = 3324.406642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.503 3.497 3 O -0.588 6.588 4 N -0.654 5.654 5 C 0.108 3.892 6 C -0.131 4.131 7 C 0.113 3.887 8 H 0.079 0.921 9 C -0.097 4.097 10 C 0.004 3.996 11 C -0.538 4.538 12 H 0.052 0.948 13 C -0.009 4.009 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.271 1.271 19 H 0.106 0.894 20 H 0.085 0.915 21 H 0.110 0.890 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.029 0.971 29 H -0.027 1.027 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 -14.658 -2.479 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.295 3.705 3 O -0.468 6.468 4 N -0.391 5.391 5 C -0.013 4.013 6 C -0.169 4.169 7 C 0.009 3.991 8 H 0.097 0.903 9 C -0.135 4.135 10 C -0.033 4.033 11 C -0.576 4.576 12 H 0.070 0.930 13 C -0.206 4.206 14 N -0.577 5.577 15 Si 0.792 3.208 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.197 1.197 19 H 0.125 0.875 20 H 0.104 0.896 21 H 0.128 0.872 22 H 0.122 0.878 23 H 0.125 0.875 24 H 0.113 0.887 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.047 0.953 29 H -0.009 1.009 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.921 -13.784 -2.362 17.744 hybrid contribution 0.834 1.191 -0.041 1.455 sum -10.087 -12.593 -2.403 16.312 Atomic orbital electron populations 1.21779 0.87405 1.05765 1.05745 1.21556 0.92063 0.81680 0.75193 1.90830 1.71402 1.32921 1.51659 1.50206 1.09416 1.06809 1.72632 1.23178 0.99151 0.76775 1.02159 1.23459 0.96606 0.95942 1.00882 1.22976 0.83150 0.93900 0.99061 0.90298 1.21535 0.98001 0.96426 0.97534 1.19337 0.96164 0.93898 0.93881 1.21749 1.29956 1.06805 0.99110 0.92951 1.26076 0.98477 0.99502 0.96525 1.70168 1.46646 1.24447 1.16445 0.85362 0.78272 0.78153 0.79004 1.18475 1.20632 1.19664 0.87528 0.89586 0.87176 0.87777 0.87450 0.88710 0.86419 0.91623 0.94709 0.95252 1.00853 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 10.18 71.24 0.73 -2.68 16 2 C 0.50 19.07 8.09 87.66 0.71 19.78 16 3 O -0.59 -31.60 14.38 -3.02 -0.04 -31.64 16 4 N -0.65 -21.02 3.57 -833.69 -2.97 -23.99 16 5 C 0.11 1.90 8.26 83.18 0.69 2.59 16 6 C -0.13 -2.65 8.03 30.94 0.25 -2.40 16 7 C 0.11 3.88 3.96 41.80 0.17 4.05 16 8 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 9 C -0.10 -4.47 4.76 30.59 0.15 -4.32 16 10 C 0.00 0.25 4.86 29.85 0.14 0.39 16 11 C -0.54 -34.79 9.11 25.60 0.23 -34.56 16 12 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16 13 C -0.01 -0.60 5.46 84.65 0.46 -0.14 16 14 N -0.94 -63.76 13.29 21.45 0.28 -63.48 16 15 Si 0.97 48.95 29.54 68.60 2.03 50.98 16 16 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 18 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 19 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 20 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.11 1.66 7.76 -2.39 -0.02 1.64 16 22 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.11 1.21 7.96 -2.39 -0.02 1.19 16 24 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 25 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.03 1.67 8.14 -2.38 -0.02 1.66 16 28 H 0.03 2.00 4.88 -2.39 -0.01 1.99 16 29 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 30 H 0.26 16.48 8.31 -92.70 -0.77 15.71 16 Total: -1.00 -88.47 254.71 3.92 -84.55 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 1.10 Total: 0.88 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.52 Total: -17.30 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.69 Total: -87.47 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.04 Total: -31.64 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -88.47 3.92 -84.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.035 kcal (2) G-P(sol) polarization free energy of solvation -88.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds