Wall clock time and date at job start Mon Mar 30 2020 02:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 119.99554 * 2 1 4 4 N 1.34776 * 120.00221 * 180.02562 * 2 1 3 5 5 C 1.47805 * 134.45584 * 359.86265 * 4 2 1 6 6 C 1.53950 * 86.03824 * 204.64698 * 5 4 2 7 7 C 1.47582 * 134.48994 * 180.02562 * 4 2 1 8 8 H 1.09004 * 113.76624 * 269.64983 * 7 4 2 9 9 C 1.52996 * 113.77274 * 41.05497 * 7 4 2 10 10 C 1.53001 * 109.47240 * 271.49403 * 9 7 4 11 11 C 1.50695 * 109.47314 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99880 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99457 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00339 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47108 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47408 * 119.99907 * 15 13 11 18 18 H 1.48502 * 109.46929 * 239.99692 * 15 13 11 19 19 H 1.09001 * 109.46554 * 239.99174 * 1 2 3 20 20 H 1.08999 * 109.46901 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46504 * 119.99887 * 1 2 3 22 22 H 1.08999 * 113.77157 * 90.38364 * 5 4 2 23 23 H 1.09002 * 113.84143 * 318.91627 * 5 4 2 24 24 H 1.09002 * 113.74409 * 222.08469 * 6 5 4 25 25 H 1.09006 * 113.74165 * 90.87920 * 6 5 4 26 26 H 1.09005 * 109.46885 * 31.49057 * 9 7 4 27 27 H 1.08995 * 109.47317 * 151.48965 * 9 7 4 28 28 H 1.09002 * 109.46584 * 300.00053 * 10 9 7 29 29 H 1.09005 * 109.46915 * 59.99827 * 10 9 7 30 30 H 0.97002 * 119.99611 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.7849 -2.5912 0.0014 6 6 3.1596 -2.8622 0.6392 7 6 3.6099 -1.5364 -0.0002 8 1 4.0340 -1.6515 -0.9977 9 6 4.4708 -0.6690 0.9203 10 6 4.9647 0.5575 0.1504 11 6 5.8121 1.4121 1.0573 12 1 5.9812 1.1108 2.0806 13 6 6.3717 2.5786 0.5807 14 7 6.1661 2.9452 -0.6656 15 14 7.4227 3.6376 1.7045 16 1 7.4995 3.0090 3.0478 17 1 8.7889 3.7589 1.1354 18 1 6.8147 4.9872 1.8241 19 1 -0.3632 -0.5140 0.8899 20 1 -0.3633 1.0277 0.0005 21 1 -0.3632 -0.5138 -0.8900 22 1 1.6716 -3.0170 -0.9956 23 1 0.9442 -2.8138 0.6585 24 1 3.6659 -3.7388 0.2349 25 1 3.1494 -2.8423 1.7290 26 1 3.8769 -0.3463 1.7755 27 1 5.3260 -1.2475 1.2694 28 1 5.5585 0.2347 -0.7048 29 1 4.1093 1.1360 -0.1987 30 1 6.5595 3.7661 -1.0008 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:08 Heat of formation + Delta-G solvation = -13.462778 kcal Electronic energy + Delta-G solvation = -12640.990643 eV Core-core repulsion = 10437.224363 eV Total energy + Delta-G solvation = -2203.766280 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87076 -37.16475 -33.44034 -31.31544 -30.16504 -28.01069 -26.33131 -23.33358 -21.58402 -20.37379 -18.32602 -16.59921 -15.93405 -15.52529 -15.07628 -14.31357 -14.03533 -13.21682 -12.80503 -12.40199 -12.11622 -12.10197 -11.98280 -11.74097 -11.23411 -10.99944 -10.80941 -10.57085 -10.29236 -9.60237 -9.20410 -8.98750 -8.68320 -8.21736 -8.06559 -5.77974 -3.77871 3.15565 3.27581 3.42471 3.48873 3.53267 4.61783 4.67413 4.81353 5.16619 5.31564 5.40403 5.51867 5.56806 5.57607 5.69361 5.85642 5.87382 6.08870 6.18065 6.33929 6.81026 6.97311 7.32749 7.91016 8.14130 8.21999 8.31729 8.66339 8.85639 9.33023 9.82763 11.33760 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047476 B = 0.009299 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.627032 B = 3010.222912 C = 3357.821974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.515 3.485 3 O -0.505 6.505 4 N -0.645 5.645 5 C 0.100 3.900 6 C -0.154 4.154 7 C 0.139 3.861 8 H 0.086 0.914 9 C -0.109 4.109 10 C 0.006 3.994 11 C -0.510 4.510 12 H 0.050 0.950 13 C 0.054 3.946 14 N -0.894 5.894 15 Si 0.887 3.113 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.285 1.285 19 H 0.079 0.921 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.005 0.995 29 H 0.056 0.944 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -12.600 1.072 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.303 3.697 3 O -0.379 6.379 4 N -0.384 5.384 5 C -0.023 4.023 6 C -0.192 4.192 7 C 0.036 3.964 8 H 0.104 0.896 9 C -0.147 4.147 10 C -0.030 4.030 11 C -0.549 4.549 12 H 0.068 0.932 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.212 1.212 19 H 0.097 0.903 20 H 0.107 0.893 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.074 0.926 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.180 -11.663 0.951 15.510 hybrid contribution 0.514 0.579 0.473 0.907 sum -9.666 -11.084 1.424 14.776 Atomic orbital electron populations 1.21853 0.92639 1.04766 1.03205 1.20456 0.89730 0.82685 0.76794 1.90877 1.69617 1.29920 1.47483 1.50343 1.08986 1.04565 1.74511 1.23101 0.98152 0.80857 1.00217 1.23642 0.95872 0.98229 1.01478 1.23011 0.82463 0.91317 0.99561 0.89596 1.21752 0.96970 0.98155 0.97803 1.19379 0.97457 0.91565 0.94646 1.21273 1.29827 1.06374 0.97428 0.93213 1.24996 0.96867 0.97703 0.94997 1.70005 1.45201 1.23636 1.14594 0.86612 0.80156 0.80626 0.81028 1.19928 1.21203 1.21164 0.90260 0.89334 0.90279 0.90299 0.90671 0.90288 0.89236 0.92975 0.92474 0.97710 0.92570 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.07 36.01 0.36 -1.70 16 2 C 0.51 9.61 8.07 -10.98 -0.09 9.53 16 3 O -0.51 -12.70 14.55 5.56 0.08 -12.62 16 4 N -0.64 -10.66 3.49 -171.00 -0.60 -11.26 16 5 C 0.10 1.08 8.63 -2.84 -0.02 1.06 16 6 C -0.15 -1.85 7.85 -25.81 -0.20 -2.05 16 7 C 0.14 2.43 4.18 -66.86 -0.28 2.15 16 8 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 9 C -0.11 -2.42 4.72 -26.73 -0.13 -2.55 16 10 C 0.01 0.18 4.86 -27.89 -0.14 0.04 16 11 C -0.51 -15.82 9.11 -34.44 -0.31 -16.14 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.05 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -29.22 13.29 55.43 0.74 -28.49 16 15 Si 0.89 23.28 29.54 -169.99 -5.02 18.26 16 16 H -0.27 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 1.78 5.18 -51.93 -0.27 1.51 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 255.84 15.07 3.86 3.86 Total: -1.00 -37.09 255.84 -6.31 -43.40 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -4.46 Total: -5.09 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.91 Total: -8.06 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.14 Total: -39.75 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -37.09 -6.31 -43.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.937 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds