Wall clock time and date at job start Mon Mar 30 2020 02:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 119.99554 * 2 1 4 4 N 1.34776 * 120.00221 * 180.02562 * 2 1 3 5 5 C 1.47805 * 134.45584 * 359.86265 * 4 2 1 6 6 C 1.53950 * 86.03824 * 204.64698 * 5 4 2 7 7 C 1.47582 * 134.48994 * 180.02562 * 4 2 1 8 8 H 1.09004 * 113.76624 * 269.64983 * 7 4 2 9 9 C 1.52996 * 113.77274 * 41.05497 * 7 4 2 10 10 C 1.53001 * 109.47240 * 271.49403 * 9 7 4 11 11 C 1.50695 * 109.47314 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99880 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99457 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00339 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47108 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47408 * 119.99907 * 15 13 11 18 18 H 1.48502 * 109.46929 * 239.99692 * 15 13 11 19 19 H 1.09001 * 109.46554 * 239.99174 * 1 2 3 20 20 H 1.08999 * 109.46901 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46504 * 119.99887 * 1 2 3 22 22 H 1.08999 * 113.77157 * 90.38364 * 5 4 2 23 23 H 1.09002 * 113.84143 * 318.91627 * 5 4 2 24 24 H 1.09002 * 113.74409 * 222.08469 * 6 5 4 25 25 H 1.09006 * 113.74165 * 90.87920 * 6 5 4 26 26 H 1.09005 * 109.46885 * 31.49057 * 9 7 4 27 27 H 1.08995 * 109.47317 * 151.48965 * 9 7 4 28 28 H 1.09002 * 109.46584 * 300.00053 * 10 9 7 29 29 H 1.09005 * 109.46915 * 59.99827 * 10 9 7 30 30 H 0.97002 * 119.99611 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.7849 -2.5912 0.0014 6 6 3.1596 -2.8622 0.6392 7 6 3.6099 -1.5364 -0.0002 8 1 4.0340 -1.6515 -0.9977 9 6 4.4708 -0.6690 0.9203 10 6 4.9647 0.5575 0.1504 11 6 5.8121 1.4121 1.0573 12 1 5.9812 1.1108 2.0806 13 6 6.3717 2.5786 0.5807 14 7 6.1661 2.9452 -0.6656 15 14 7.4227 3.6376 1.7045 16 1 7.4995 3.0090 3.0478 17 1 8.7889 3.7589 1.1354 18 1 6.8147 4.9872 1.8241 19 1 -0.3632 -0.5140 0.8899 20 1 -0.3633 1.0277 0.0005 21 1 -0.3632 -0.5138 -0.8900 22 1 1.6716 -3.0170 -0.9956 23 1 0.9442 -2.8138 0.6585 24 1 3.6659 -3.7388 0.2349 25 1 3.1494 -2.8423 1.7290 26 1 3.8769 -0.3463 1.7755 27 1 5.3260 -1.2475 1.2694 28 1 5.5585 0.2347 -0.7048 29 1 4.1093 1.1360 -0.1987 30 1 6.5595 3.7661 -1.0008 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:08 Heat of formation + Delta-G solvation = -40.657272 kcal Electronic energy + Delta-G solvation = -12642.169885 eV Core-core repulsion = 10437.224363 eV Total energy + Delta-G solvation = -2204.945522 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16332 -38.60949 -35.64502 -33.26453 -31.61272 -29.08664 -28.24251 -25.09890 -22.75802 -22.30205 -19.65887 -18.55040 -17.60715 -16.90375 -16.58081 -16.34149 -15.25783 -14.93371 -14.48834 -13.89061 -13.74644 -13.55753 -13.10941 -12.92752 -12.88716 -12.85107 -12.50869 -12.24893 -12.09388 -11.66049 -11.28936 -10.85117 -10.64222 -10.31581 -9.54984 -8.17840 -6.28319 1.32558 1.36055 1.48590 1.81185 2.06602 2.39329 3.13966 3.59513 3.74376 4.14019 4.26344 4.39181 4.43978 4.55647 4.63411 4.67945 4.73049 4.97149 4.98821 5.07791 5.22439 5.31439 5.41493 5.54134 5.83488 6.02498 6.27734 6.89234 6.98074 7.38186 7.44454 8.94849 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047476 B = 0.009299 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.627032 B = 3010.222912 C = 3357.821974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.496 3.504 3 O -0.591 6.591 4 N -0.652 5.652 5 C 0.111 3.889 6 C -0.131 4.131 7 C 0.116 3.884 8 H 0.078 0.922 9 C -0.094 4.094 10 C 0.009 3.991 11 C -0.539 4.539 12 H 0.053 0.947 13 C -0.009 4.009 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.281 1.281 19 H 0.111 0.889 20 H 0.079 0.921 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.035 0.965 27 H 0.068 0.932 28 H -0.024 1.024 29 H 0.021 0.979 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.362 -14.730 2.185 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.288 3.712 3 O -0.472 6.472 4 N -0.389 5.389 5 C -0.010 4.010 6 C -0.169 4.169 7 C 0.013 3.987 8 H 0.096 0.904 9 C -0.132 4.132 10 C -0.028 4.028 11 C -0.577 4.577 12 H 0.072 0.928 13 C -0.206 4.206 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.206 1.206 19 H 0.129 0.871 20 H 0.098 0.902 21 H 0.129 0.871 22 H 0.124 0.876 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.086 0.914 28 H -0.006 1.006 29 H 0.039 0.961 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.140 -13.879 2.070 17.917 hybrid contribution 0.799 1.194 0.081 1.439 sum -10.341 -12.685 2.151 16.507 Atomic orbital electron populations 1.21806 0.87602 1.05309 1.06125 1.21670 0.92218 0.82102 0.75211 1.90839 1.71704 1.33052 1.51571 1.50647 1.08797 1.06648 1.72805 1.23465 0.98645 0.76415 1.02453 1.23556 0.96179 0.95549 1.01572 1.23061 0.82766 0.94084 0.98797 0.90421 1.21492 0.97958 0.96440 0.97348 1.19247 0.95477 0.93852 0.94190 1.21748 1.30530 1.07460 0.97946 0.92834 1.26084 0.98351 0.99316 0.96826 1.70168 1.46351 1.24347 1.16860 0.85353 0.78237 0.78115 0.79033 1.18436 1.19651 1.20644 0.87057 0.90169 0.87148 0.87576 0.87081 0.86989 0.88834 0.94630 0.91392 1.00600 0.96076 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 10.07 71.24 0.72 -2.71 16 2 C 0.50 18.72 8.07 87.66 0.71 19.43 16 3 O -0.59 -31.71 14.55 -3.03 -0.04 -31.75 16 4 N -0.65 -20.77 3.49 -813.30 -2.84 -23.61 16 5 C 0.11 1.89 8.63 86.44 0.75 2.64 16 6 C -0.13 -2.66 7.85 31.25 0.25 -2.41 16 7 C 0.12 4.03 4.18 45.09 0.19 4.22 16 8 H 0.08 2.79 8.13 -2.39 -0.02 2.77 16 9 C -0.09 -4.34 4.72 30.59 0.14 -4.19 16 10 C 0.01 0.56 4.86 29.85 0.15 0.71 16 11 C -0.54 -34.70 9.11 25.60 0.23 -34.47 16 12 H 0.05 3.30 7.74 -2.91 -0.02 3.28 16 13 C -0.01 -0.59 5.46 84.65 0.46 -0.13 16 14 N -0.94 -63.62 13.29 21.45 0.28 -63.34 16 15 Si 0.97 48.79 29.54 68.60 2.03 50.82 16 16 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 19 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 20 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 21 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 1.87 8.10 -2.38 -0.02 1.86 16 26 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 28 H -0.02 -1.58 8.14 -2.39 -0.02 -1.59 16 29 H 0.02 1.44 5.18 -2.38 -0.01 1.43 16 30 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 Total: -1.00 -88.33 255.84 4.12 -84.21 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.10 Total: 0.60 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.59 Total: -16.92 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.56 Total: -86.95 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.04 Total: -31.75 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -88.33 4.12 -84.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.551 kcal (2) G-P(sol) polarization free energy of solvation -88.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds