Wall clock time and date at job start Mon Mar 30 2020 02:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47487 * 2 1 4 4 H 1.08996 * 109.46802 * 180.33144 * 3 2 1 5 5 C 1.50703 * 109.47163 * 60.32881 * 3 2 1 6 6 H 1.07998 * 119.99721 * 244.33051 * 5 3 2 7 7 C 1.37871 * 119.99721 * 64.33095 * 5 3 2 8 8 N 1.31511 * 120.00466 * 7.90607 * 7 5 3 9 9 Si 1.86798 * 119.99830 * 187.90359 * 7 5 3 10 10 H 1.48501 * 109.47410 * 90.00178 * 9 7 5 11 11 H 1.48502 * 109.47234 * 329.99877 * 9 7 5 12 12 H 1.48500 * 109.47434 * 210.00188 * 9 7 5 13 13 C 1.52996 * 109.46894 * 300.33107 * 3 2 1 14 14 H 1.08999 * 110.21877 * 61.66941 * 13 3 2 15 15 C 1.54482 * 110.24860 * 183.60331 * 13 3 2 16 16 C 1.54760 * 101.70709 * 144.35623 * 15 13 3 17 17 C 1.51281 * 104.23376 * 335.30747 * 16 15 13 18 18 O 1.21283 * 124.93862 * 196.16691 * 17 16 15 19 19 N 1.34414 * 110.11983 * 16.18849 * 17 16 15 20 20 H 1.09001 * 109.47606 * 185.06718 * 1 2 3 21 21 H 1.08999 * 109.47040 * 305.07133 * 1 2 3 22 22 H 1.09006 * 109.46846 * 65.06615 * 1 2 3 23 23 H 1.08994 * 109.46963 * 239.99212 * 2 1 3 24 24 H 1.09007 * 109.46445 * 119.99766 * 2 1 3 25 25 H 0.97005 * 120.00171 * 3.82836 * 8 7 5 26 26 H 1.08995 * 110.96839 * 262.53954 * 15 13 3 27 27 H 1.09008 * 110.96671 * 26.29381 * 15 13 3 28 28 H 1.09001 * 110.52424 * 216.58514 * 16 15 13 29 29 H 1.09005 * 110.52441 * 94.02562 * 16 15 13 30 30 H 0.96993 * 124.35229 * 180.42771 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4423 -0.0059 5 6 1.5444 2.1505 1.2345 6 1 0.8667 2.9863 1.1422 7 6 1.9563 1.7314 2.4817 8 7 2.8976 0.8195 2.5915 9 14 1.1773 2.4587 4.0159 10 1 -0.0022 1.6450 4.4055 11 1 0.7473 3.8530 3.7392 12 1 2.1676 2.4566 5.1225 13 6 1.5233 2.1660 -1.2450 14 1 0.4339 2.1991 -1.2366 15 6 2.1011 3.5973 -1.3100 16 6 2.2962 3.7883 -2.8333 17 6 2.4363 2.3808 -3.3698 18 8 2.8765 2.0948 -4.4631 19 7 2.0016 1.4933 -2.4587 20 1 -0.3634 -1.0236 0.0908 21 1 -0.3633 0.5905 0.8411 22 1 -0.3633 0.4333 -0.9319 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 3.3410 0.4822 1.7974 26 1 1.3916 4.3227 -0.9121 27 1 3.0542 3.6574 -0.7844 28 1 3.1994 4.3646 -3.0336 29 1 1.4269 4.2788 -3.2714 30 1 2.0039 0.5319 -2.5866 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:54 Heat of formation + Delta-G solvation = -79.844347 kcal Electronic energy + Delta-G solvation = -12993.949614 eV Core-core repulsion = 10787.304813 eV Total energy + Delta-G solvation = -2206.644801 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.33557 -38.42702 -36.07175 -33.30767 -32.11291 -29.74954 -26.60322 -25.49651 -22.86367 -21.71456 -20.85386 -18.71040 -18.21993 -17.16302 -15.99391 -15.60157 -15.18005 -15.05899 -14.84766 -14.45213 -13.88446 -13.56490 -13.36592 -13.00194 -12.59891 -12.51169 -11.94453 -11.90360 -11.85840 -11.62828 -11.18933 -10.91760 -10.49215 -10.33134 -9.92360 -8.45733 -6.17203 1.57819 1.61275 1.66892 1.82719 2.49272 2.68119 3.31771 3.52073 3.79050 4.01362 4.25539 4.42998 4.47328 4.58998 4.69266 4.79942 4.90484 5.04478 5.15342 5.27298 5.33859 5.48752 5.64332 5.69329 5.83932 6.10530 6.20979 6.36808 6.74734 7.26291 7.60130 8.91300 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048054 B = 0.010968 C = 0.009951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.542804 B = 2552.157411 C = 2813.217197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C 0.030 3.970 4 H -0.010 1.010 5 C -0.578 4.578 6 H 0.060 0.940 7 C -0.026 4.026 8 N -0.942 5.942 9 Si 1.103 2.897 10 H -0.280 1.280 11 H -0.265 1.265 12 H -0.297 1.297 13 C 0.145 3.855 14 H 0.085 0.915 15 C -0.109 4.109 16 C -0.145 4.145 17 C 0.508 3.492 18 O -0.596 6.596 19 N -0.718 5.718 20 H 0.043 0.957 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.258 0.742 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 4.792 -4.959 8.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C 0.011 3.989 4 H 0.008 0.992 5 C -0.617 4.617 6 H 0.078 0.922 7 C -0.225 4.225 8 N -0.580 5.580 9 Si 0.927 3.073 10 H -0.207 1.207 11 H -0.189 1.189 12 H -0.224 1.224 13 C 0.041 3.959 14 H 0.103 0.897 15 C -0.147 4.147 16 C -0.185 4.185 17 C 0.296 3.704 18 O -0.479 6.479 19 N -0.370 5.370 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.122 0.878 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.145 4.698 -3.843 7.957 hybrid contribution 0.433 -0.857 -1.453 1.741 sum -4.712 3.842 -5.296 8.063 Atomic orbital electron populations 1.21570 0.95102 1.00143 1.01589 1.21530 0.97125 0.98601 0.98445 1.19083 0.93956 0.92727 0.93163 0.99239 1.22033 1.30145 1.17565 0.91922 0.92189 1.26846 0.95565 0.95571 1.04485 1.70870 1.24049 1.30115 1.33015 0.83097 0.75207 0.76299 0.72658 1.20652 1.18939 1.22360 1.21807 0.98604 0.92549 0.82970 0.89670 1.22524 1.02475 0.95675 0.94037 1.22415 1.06313 0.93313 0.96446 1.21533 0.75106 0.90526 0.83243 1.90665 1.49294 1.84815 1.23112 1.46626 1.63036 1.09580 1.17790 0.93835 0.93003 0.92487 0.94488 0.94945 0.93137 0.87813 0.91743 0.87295 0.85549 0.75728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.26 71.98 0.67 -3.97 16 2 C -0.12 -4.97 5.23 30.59 0.16 -4.81 16 3 C 0.03 1.30 1.38 -11.54 -0.02 1.29 16 4 H -0.01 -0.53 7.48 -2.39 -0.02 -0.55 16 5 C -0.58 -27.71 6.64 25.60 0.17 -27.54 16 6 H 0.06 2.75 7.68 -2.91 -0.02 2.73 16 7 C -0.03 -1.36 5.22 84.65 0.44 -0.92 16 8 N -0.94 -54.02 12.86 21.44 0.28 -53.74 16 9 Si 1.10 46.60 29.91 68.60 2.05 48.65 16 10 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 12 H -0.30 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.14 5.00 2.55 45.44 0.12 5.12 16 14 H 0.09 2.81 6.68 -2.39 -0.02 2.79 16 15 C -0.11 -3.31 6.08 31.70 0.19 -3.11 16 16 C -0.15 -3.83 6.86 30.63 0.21 -3.62 16 17 C 0.51 17.51 8.43 87.90 0.74 18.25 16 18 O -0.60 -24.70 18.03 -3.04 -0.05 -24.75 16 19 N -0.72 -24.15 5.73 -439.43 -2.52 -26.67 16 20 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.05 2.07 7.05 -2.39 -0.02 2.06 16 22 H 0.06 1.82 6.75 -2.38 -0.02 1.80 16 23 H 0.04 1.39 6.80 -2.39 -0.02 1.38 16 24 H 0.03 1.57 6.31 -2.38 -0.02 1.56 16 25 H 0.26 15.05 6.14 -92.70 -0.57 14.48 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.06 2.21 7.90 -2.38 -0.02 2.19 16 28 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.13 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.40 13.25 7.58 -92.71 -0.70 12.55 16 Total: -1.00 -60.94 242.44 3.07 -57.87 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.63 Total: 17.95 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 2.68 Total: -19.32 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -2.24 Total: -80.41 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.05 Total: 48.65 kcal Total: -60.94 3.07 -57.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.975 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds