Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47391 * 2 1 4 4 H 1.08998 * 109.47039 * 305.64419 * 3 2 1 5 5 C 1.50696 * 109.47182 * 65.64110 * 3 2 1 6 6 H 1.08002 * 120.00193 * 65.34886 * 5 3 2 7 7 C 1.37883 * 120.00156 * 245.34977 * 5 3 2 8 8 N 1.31507 * 119.99596 * 6.16715 * 7 5 3 9 9 Si 1.86800 * 119.99971 * 186.17180 * 7 5 3 10 10 H 1.48500 * 109.46844 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47018 * 299.99801 * 9 7 5 12 12 H 1.48496 * 109.47395 * 59.99577 * 9 7 5 13 13 C 1.53003 * 109.47237 * 185.64330 * 3 2 1 14 14 H 1.08994 * 110.21589 * 52.32733 * 13 3 2 15 15 C 1.54476 * 110.24699 * 174.26225 * 13 3 2 16 16 C 1.54630 * 101.76741 * 93.58105 * 15 13 3 17 17 C 1.51281 * 104.19088 * 24.79819 * 16 15 13 18 18 O 1.21289 * 124.94015 * 163.78327 * 17 16 15 19 19 N 1.34421 * 110.11788 * 343.74656 * 17 16 15 20 20 H 1.09000 * 109.47339 * 64.78944 * 1 2 3 21 21 H 1.08997 * 109.47557 * 184.79384 * 1 2 3 22 22 H 1.09009 * 109.46835 * 304.79300 * 1 2 3 23 23 H 1.09004 * 109.46686 * 240.00107 * 2 1 3 24 24 H 1.08994 * 109.47075 * 120.00391 * 2 1 3 25 25 H 0.97001 * 120.00418 * 355.12970 * 8 7 5 26 26 H 1.08998 * 110.97283 * 211.70361 * 15 13 3 27 27 H 1.09001 * 110.96971 * 335.46393 * 15 13 3 28 28 H 1.08993 * 110.48744 * 143.47738 * 16 15 13 29 29 H 1.08998 * 110.48842 * 265.99395 * 16 15 13 30 30 H 0.97006 * 124.34471 * 179.61681 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9846 -0.8351 5 6 1.6550 2.1114 1.2943 6 1 2.0740 1.7641 2.2272 7 6 0.7679 3.1669 1.2876 8 7 0.1651 3.5120 0.1709 9 14 0.4224 4.1067 2.8646 10 1 -0.5594 5.1870 2.5920 11 1 -0.1321 3.1785 3.8826 12 1 1.6844 4.7019 3.3727 13 6 3.5635 1.4448 -0.1418 14 1 3.8625 0.8471 -1.0029 15 6 4.0846 2.8916 -0.2883 16 6 4.4191 3.2561 1.1767 17 6 4.6722 1.9214 1.8424 18 8 5.2302 1.7719 2.9089 19 7 4.1880 0.9255 1.0805 20 1 -0.3634 0.4377 -0.9298 21 1 -0.3634 -1.0240 0.0859 22 1 -0.3633 0.5865 0.8440 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.3965 3.0711 -0.6615 26 1 4.9779 2.9232 -0.9120 27 1 3.3097 3.5469 -0.6861 28 1 5.3120 3.8796 1.2203 29 1 3.5766 3.7646 1.6452 30 1 4.2440 -0.0155 1.3094 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260354189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = -56.808666 kcal Electronic energy + Delta-G solvation = -13323.603103 eV Core-core repulsion = 11117.957204 eV Total energy + Delta-G solvation = -2205.645899 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65497 -36.43975 -33.93002 -31.65565 -30.40647 -28.00436 -25.30347 -23.24489 -20.78999 -20.22469 -19.39124 -17.02931 -16.08519 -15.30642 -14.48422 -13.79356 -13.74294 -13.15378 -12.85225 -12.66088 -12.18707 -11.92556 -11.66343 -11.07388 -10.85144 -10.80731 -10.38626 -10.21402 -10.06364 -9.88007 -9.43176 -9.07219 -8.70288 -8.33249 -8.07831 -6.37925 -4.05951 3.40044 3.44280 3.47110 3.61382 4.24135 4.48370 5.22252 5.27819 5.38504 5.58183 5.85923 6.07458 6.16561 6.21909 6.31947 6.35156 6.60113 6.66365 6.76181 6.83475 6.95424 7.17215 7.31526 7.36073 7.62914 7.85378 8.20072 8.42215 8.86598 9.08401 9.61032 10.99817 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.019100 C = 0.013983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.815584 B = 1465.614999 C = 2001.957031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C 0.009 3.991 4 H 0.056 0.944 5 C -0.577 4.577 6 H 0.048 0.952 7 C 0.028 3.972 8 N -0.911 5.911 9 Si 1.051 2.949 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.286 1.286 13 C 0.137 3.863 14 H 0.056 0.944 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.534 3.466 18 O -0.571 6.571 19 N -0.710 5.710 20 H 0.039 0.961 21 H 0.025 0.975 22 H 0.068 0.932 23 H 0.024 0.976 24 H 0.042 0.958 25 H 0.269 0.731 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -2.320 -2.928 5.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C -0.010 4.010 4 H 0.074 0.926 5 C -0.615 4.615 6 H 0.066 0.934 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.880 3.120 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.212 1.212 13 C 0.032 3.968 14 H 0.074 0.926 15 C -0.151 4.151 16 C -0.181 4.181 17 C 0.321 3.679 18 O -0.452 6.452 19 N -0.362 5.362 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.571 -1.039 -1.793 4.129 hybrid contribution 0.778 -1.751 -0.532 1.989 sum 4.350 -2.790 -2.325 5.666 Atomic orbital electron populations 1.21559 0.96511 0.98659 1.02223 1.21579 0.95918 0.99118 0.97893 1.19488 0.89080 0.92964 0.99502 0.92592 1.21683 1.29878 1.17355 0.92571 0.93362 1.25616 0.93073 0.95819 1.03189 1.70870 1.39263 1.44931 0.99731 0.83780 0.76646 0.76615 0.74932 1.20844 1.21576 1.21198 1.21953 0.96791 0.93323 0.84720 0.92555 1.22379 1.00349 0.96737 0.95613 1.22205 1.03258 0.95807 0.96836 1.20776 0.75622 0.87960 0.83503 1.90639 1.45673 1.86701 1.22210 1.46077 1.58052 1.08358 1.23680 0.94234 0.95616 0.91256 0.95765 0.93965 0.91762 0.92371 0.89389 0.90507 0.86671 0.76671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.81 37.16 0.36 -2.31 16 2 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 3 C 0.01 0.20 1.80 -91.77 -0.17 0.04 16 4 H 0.06 1.29 5.66 -51.93 -0.29 1.00 16 5 C -0.58 -14.11 4.40 -34.44 -0.15 -14.26 16 6 H 0.05 1.28 6.89 -52.49 -0.36 0.92 16 7 C 0.03 0.71 5.37 -17.82 -0.10 0.62 16 8 N -0.91 -24.63 13.65 55.43 0.76 -23.87 16 9 Si 1.05 24.24 29.91 -169.99 -5.08 19.15 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.14 2.53 3.40 -67.01 -0.23 2.31 16 14 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.11 -1.98 6.50 -25.10 -0.16 -2.15 16 16 C -0.14 -2.71 6.12 -26.74 -0.16 -2.88 16 17 C 0.53 11.36 7.30 -10.86 -0.08 11.28 16 18 O -0.57 -13.93 18.03 5.55 0.10 -13.83 16 19 N -0.71 -13.51 5.15 -52.77 -0.27 -13.78 16 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 1.60 7.19 -51.92 -0.37 1.23 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 25 H 0.27 7.16 6.28 -40.82 -0.26 6.90 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.66 7.85 -51.93 -0.41 1.25 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.12 2.47 7.19 -51.93 -0.37 2.10 16 30 H 0.40 6.94 8.96 -40.82 -0.37 6.57 16 LS Contribution 244.96 15.07 3.69 3.69 Total: -1.00 -28.26 244.96 -5.81 -34.08 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.18 Total: 4.18 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.82 Total: -9.62 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.48 Total: -37.65 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.10 Total: -13.83 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.15 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.26 -5.81 -34.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.732 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds