Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08993 * 109.46955 * 305.00200 * 3 2 1 5 5 C 1.50699 * 109.46866 * 184.99981 * 3 2 1 6 6 H 1.08006 * 119.99785 * 240.00275 * 5 3 2 7 7 C 1.37879 * 119.99908 * 59.99867 * 5 3 2 8 8 N 1.31503 * 120.00171 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99679 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47378 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47194 * 120.00285 * 9 7 5 12 12 H 1.48501 * 109.47174 * 240.00081 * 9 7 5 13 13 C 1.52997 * 109.47127 * 65.00188 * 3 2 1 14 14 H 1.09004 * 110.21527 * 306.92741 * 13 3 2 15 15 C 1.54481 * 110.24699 * 184.99551 * 13 3 2 16 16 C 1.54628 * 101.76568 * 215.58269 * 15 13 3 17 17 C 1.51275 * 104.19720 * 24.80053 * 16 15 13 18 18 O 1.21276 * 124.94543 * 163.78148 * 17 16 15 19 19 N 1.34423 * 110.11337 * 343.74309 * 17 16 15 20 20 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 22 22 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 23 23 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 24 24 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 25 25 H 0.96999 * 120.00204 * 179.97438 * 8 7 5 26 26 H 1.08994 * 110.96932 * 333.70543 * 15 13 3 27 27 H 1.09005 * 110.96480 * 97.42586 * 15 13 3 28 28 H 1.09002 * 110.48220 * 143.48230 * 16 15 13 29 29 H 1.08999 * 110.48340 * 266.11961 * 16 15 13 30 30 H 0.97004 * 124.34888 * 179.59136 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5986 1.5475 -0.1948 11 1 6.4971 -0.5173 -1.4629 12 1 6.3990 1.6168 -2.6102 13 6 1.6352 2.1266 1.3073 14 1 0.5621 2.0245 1.4693 15 6 2.0314 3.6194 1.2746 16 6 2.4327 3.8714 2.7465 17 6 2.8324 2.5061 3.2610 18 8 3.4696 2.3044 4.2730 19 7 2.3778 1.5491 2.4338 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8292 -0.0603 -2.9502 26 1 2.8763 3.7841 0.6062 27 1 1.1833 4.2418 0.9888 28 1 3.2754 4.5608 2.7993 29 1 1.5854 4.2592 3.3119 30 1 2.5220 0.5988 2.5646 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260354192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -56.702346 kcal Electronic energy + Delta-G solvation = -13048.284814 eV Core-core repulsion = 10842.643526 eV Total energy + Delta-G solvation = -2205.641288 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.67464 -36.50156 -33.87965 -31.67017 -30.55726 -28.26931 -25.51793 -23.09059 -21.17146 -20.01635 -19.07499 -16.94631 -16.15260 -15.36129 -14.67251 -14.02663 -13.29671 -13.19260 -13.01712 -12.77024 -12.37927 -11.93978 -11.60466 -11.38128 -10.91965 -10.78276 -10.63373 -10.44858 -9.98509 -9.75966 -9.40985 -9.22447 -8.85755 -8.43690 -8.09619 -6.05498 -4.11359 3.25161 3.26797 3.35729 3.41356 4.21628 4.40259 5.01955 5.22616 5.25583 5.47216 5.76965 5.98884 6.07973 6.18949 6.19255 6.37019 6.41965 6.50302 6.83500 6.87898 6.99704 7.28735 7.51693 7.66853 7.80241 7.88367 8.03703 8.35896 8.92276 8.97612 9.54281 10.99656 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.015005 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.790827 B = 1865.618717 C = 2438.108442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.041 3.959 4 H 0.041 0.959 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.132 3.868 14 H 0.061 0.939 15 C -0.126 4.126 16 C -0.156 4.156 17 C 0.515 3.485 18 O -0.567 6.567 19 N -0.697 5.697 20 H 0.033 0.967 21 H 0.037 0.963 22 H 0.045 0.955 23 H 0.096 0.904 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 3.648 3.226 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.023 3.977 4 H 0.059 0.941 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.028 3.972 14 H 0.079 0.921 15 C -0.163 4.163 16 C -0.196 4.196 17 C 0.301 3.699 18 O -0.448 6.448 19 N -0.349 5.349 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.710 3.576 3.536 6.891 hybrid contribution 1.064 -0.538 -0.245 1.217 sum -3.646 3.038 3.292 5.776 Atomic orbital electron populations 1.21905 0.99376 0.99390 1.00062 1.21635 0.91468 1.00367 1.02404 1.19028 0.96343 0.92178 0.90200 0.94141 1.21134 0.91031 1.37300 1.04948 0.92364 1.24932 0.97804 0.95320 0.95829 1.69865 1.34654 1.38762 1.09493 0.86616 0.86214 0.77726 0.77975 1.19810 1.21136 1.21093 1.21977 0.93613 0.92763 0.88883 0.92144 1.22687 1.02914 0.95743 0.95002 1.22303 1.02934 0.96222 0.98142 1.20838 0.78065 0.88348 0.82646 1.90662 1.41834 1.85876 1.26403 1.46221 1.54327 1.09150 1.25240 0.94786 0.94423 0.93544 0.88547 0.95216 0.93074 0.88552 0.90766 0.89040 0.89088 0.75519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.68 37.16 0.36 -2.31 16 2 C -0.12 -2.58 5.21 -26.73 -0.14 -2.72 16 3 C 0.04 0.91 1.63 -91.77 -0.15 0.76 16 4 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.51 -12.68 7.10 -34.44 -0.24 -12.92 16 6 H 0.06 1.51 7.17 -52.48 -0.38 1.13 16 7 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -24.01 11.29 55.43 0.63 -23.38 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.13 2.40 3.05 -67.01 -0.20 2.20 16 14 H 0.06 1.00 6.32 -51.93 -0.33 0.68 16 15 C -0.13 -2.03 6.47 -25.10 -0.16 -2.20 16 16 C -0.16 -2.43 6.86 -26.75 -0.18 -2.62 16 17 C 0.51 10.12 8.43 -10.86 -0.09 10.03 16 18 O -0.57 -13.05 18.03 5.56 0.10 -12.95 16 19 N -0.70 -13.28 4.88 -52.77 -0.26 -13.54 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.04 0.60 6.44 -51.92 -0.33 0.27 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.10 2.39 5.95 -51.93 -0.31 2.08 16 24 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 25 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 26 H 0.10 1.75 6.99 -51.93 -0.36 1.39 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.41 7.77 7.95 -40.82 -0.32 7.44 16 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -28.47 243.83 -5.86 -34.33 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.07 Total: 4.23 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.91 Total: -8.25 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.37 Total: -36.92 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.10 Total: -12.95 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.47 -5.86 -34.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.369 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds