Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08993 * 109.46955 * 305.00200 * 3 2 1 5 5 C 1.50699 * 109.46866 * 184.99981 * 3 2 1 6 6 H 1.08006 * 119.99785 * 240.00275 * 5 3 2 7 7 C 1.37879 * 119.99908 * 59.99867 * 5 3 2 8 8 N 1.31503 * 120.00171 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99679 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47378 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47194 * 120.00285 * 9 7 5 12 12 H 1.48501 * 109.47174 * 240.00081 * 9 7 5 13 13 C 1.52997 * 109.47127 * 65.00188 * 3 2 1 14 14 H 1.09004 * 110.21527 * 306.92741 * 13 3 2 15 15 C 1.54481 * 110.24699 * 184.99551 * 13 3 2 16 16 C 1.54628 * 101.76568 * 215.58269 * 15 13 3 17 17 C 1.51275 * 104.19720 * 24.80053 * 16 15 13 18 18 O 1.21276 * 124.94543 * 163.78148 * 17 16 15 19 19 N 1.34423 * 110.11337 * 343.74309 * 17 16 15 20 20 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 22 22 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 23 23 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 24 24 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 25 25 H 0.96999 * 120.00204 * 179.97438 * 8 7 5 26 26 H 1.08994 * 110.96932 * 333.70543 * 15 13 3 27 27 H 1.09005 * 110.96480 * 97.42586 * 15 13 3 28 28 H 1.09002 * 110.48220 * 143.48230 * 16 15 13 29 29 H 1.08999 * 110.48340 * 266.11961 * 16 15 13 30 30 H 0.97004 * 124.34888 * 179.59136 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5986 1.5475 -0.1948 11 1 6.4971 -0.5173 -1.4629 12 1 6.3990 1.6168 -2.6102 13 6 1.6352 2.1266 1.3073 14 1 0.5621 2.0245 1.4693 15 6 2.0314 3.6194 1.2746 16 6 2.4327 3.8714 2.7465 17 6 2.8324 2.5061 3.2610 18 8 3.4696 2.3044 4.2730 19 7 2.3778 1.5491 2.4338 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8292 -0.0603 -2.9502 26 1 2.8763 3.7841 0.6062 27 1 1.1833 4.2418 0.9888 28 1 3.2754 4.5608 2.7993 29 1 1.5854 4.2592 3.3119 30 1 2.5220 0.5988 2.5646 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -75.169532 kcal Electronic energy + Delta-G solvation = -13049.085612 eV Core-core repulsion = 10842.643526 eV Total energy + Delta-G solvation = -2206.442086 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.17998 -38.14767 -35.59427 -33.50069 -31.95258 -29.88497 -27.22809 -24.76285 -22.63065 -21.53523 -20.69322 -18.68051 -17.80639 -16.94177 -16.54972 -15.62642 -14.94887 -14.77148 -14.56207 -14.33544 -13.90536 -13.31011 -13.17025 -13.10427 -12.72142 -12.48556 -12.32998 -11.86473 -11.78819 -11.46482 -11.07082 -10.79564 -10.63251 -10.39931 -9.67690 -8.05621 -6.14623 1.35776 1.41670 1.49794 1.74553 2.43485 2.74744 3.23114 3.65055 3.90973 4.19838 4.41973 4.60670 4.71636 4.72509 4.81411 4.91381 5.02332 5.17364 5.29612 5.42879 5.49569 5.60688 5.71264 5.92742 6.08409 6.21285 6.33378 6.47543 6.96261 7.43593 7.52298 8.97771 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.015005 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.790827 B = 1865.618717 C = 2438.108442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.042 3.958 4 H 0.023 0.977 5 C -0.504 4.504 6 H 0.046 0.954 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.934 3.066 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.281 1.281 13 C 0.135 3.865 14 H 0.089 0.911 15 C -0.121 4.121 16 C -0.143 4.143 17 C 0.503 3.497 18 O -0.608 6.608 19 N -0.700 5.700 20 H 0.045 0.955 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.027 0.973 25 H 0.257 0.743 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 4.698 3.812 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.023 3.977 4 H 0.041 0.959 5 C -0.543 4.543 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.762 3.238 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.031 3.969 14 H 0.107 0.893 15 C -0.158 4.158 16 C -0.183 4.183 17 C 0.291 3.709 18 O -0.492 6.492 19 N -0.350 5.350 20 H 0.064 0.936 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.865 4.634 4.103 8.527 hybrid contribution 1.422 -0.890 -0.431 1.732 sum -4.442 3.745 3.673 6.873 Atomic orbital electron populations 1.21783 0.96256 1.00615 1.01084 1.21496 0.94259 0.99484 1.00453 1.18949 0.94253 0.92754 0.91761 0.95930 1.21371 0.92950 1.35944 1.04001 0.93582 1.25489 1.00548 0.95804 0.96170 1.69972 1.35528 1.39797 1.09864 0.85884 0.83053 0.77298 0.77599 1.20372 1.21410 1.20705 1.21995 0.94867 0.93610 0.86461 0.89346 1.22681 1.03445 0.94751 0.94961 1.22323 1.04580 0.93756 0.97604 1.21571 0.77245 0.90011 0.82043 1.90636 1.43623 1.86716 1.28212 1.46360 1.54137 1.09141 1.25346 0.93572 0.92114 0.93675 0.92235 0.95435 0.93335 0.91048 0.87021 0.88132 0.85519 0.76078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.68 71.98 0.70 -3.96 16 2 C -0.12 -5.00 5.21 30.60 0.16 -4.84 16 3 C 0.04 1.79 1.63 -11.54 -0.02 1.77 16 4 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.50 -25.27 7.10 25.60 0.18 -25.09 16 6 H 0.05 2.39 7.17 -2.91 -0.02 2.37 16 7 C 0.02 0.97 5.29 84.66 0.45 1.42 16 8 N -0.91 -49.83 11.29 21.45 0.24 -49.59 16 9 Si 0.93 43.30 29.54 68.60 2.03 45.33 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.13 4.56 3.05 45.44 0.14 4.70 16 14 H 0.09 2.56 6.32 -2.38 -0.02 2.55 16 15 C -0.12 -3.53 6.47 31.65 0.20 -3.32 16 16 C -0.14 -3.98 6.86 30.58 0.21 -3.77 16 17 C 0.50 18.93 8.43 87.90 0.74 19.67 16 18 O -0.61 -27.56 18.03 -3.02 -0.05 -27.62 16 19 N -0.70 -25.59 4.88 -439.44 -2.14 -27.73 16 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.06 1.73 6.44 -2.38 -0.02 1.71 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 2.98 5.95 -2.39 -0.01 2.96 16 24 H 0.03 1.13 7.07 -2.39 -0.02 1.11 16 25 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 26 H 0.07 2.47 6.99 -2.39 -0.02 2.45 16 27 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.40 15.07 7.95 -92.71 -0.74 14.33 16 Total: -1.00 -61.32 243.83 3.23 -58.09 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.40 Total: 14.95 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 2.76 Total: -13.43 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.90 Total: -77.32 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -61.32 3.23 -58.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.082 kcal (2) G-P(sol) polarization free energy of solvation -61.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds