Wall clock time and date at job start Mon Mar 30 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47283 * 2 1 4 4 H 1.08998 * 109.47143 * 179.24329 * 3 2 1 5 5 C 1.50701 * 109.47070 * 299.24757 * 3 2 1 6 6 H 1.08001 * 119.99799 * 114.37784 * 5 3 2 7 7 C 1.37873 * 120.00043 * 294.37909 * 5 3 2 8 8 N 1.31520 * 119.99949 * 350.90634 * 7 5 3 9 9 Si 1.86799 * 120.00192 * 170.90894 * 7 5 3 10 10 H 1.48490 * 109.47217 * 59.99705 * 9 7 5 11 11 H 1.48504 * 109.47086 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46647 * 299.99674 * 9 7 5 13 13 C 1.53004 * 109.46860 * 59.24481 * 3 2 1 14 14 H 1.08996 * 110.21535 * 299.52376 * 13 3 2 15 15 C 1.54483 * 110.31883 * 177.54854 * 13 3 2 16 16 C 1.54623 * 101.76386 * 215.54724 * 15 13 3 17 17 C 1.51290 * 104.19822 * 24.79579 * 16 15 13 18 18 O 1.21276 * 124.94224 * 164.01519 * 17 16 15 19 19 N 1.34413 * 110.11030 * 343.74779 * 17 16 15 20 20 H 1.08995 * 109.47298 * 302.35874 * 1 2 3 21 21 H 1.09006 * 109.47154 * 62.35515 * 1 2 3 22 22 H 1.09005 * 109.47288 * 182.35589 * 1 2 3 23 23 H 1.08993 * 109.47361 * 239.99980 * 2 1 3 24 24 H 1.09000 * 109.47009 * 119.99914 * 2 1 3 25 25 H 0.97000 * 120.00275 * 180.02562 * 8 7 5 26 26 H 1.09006 * 110.96448 * 333.66058 * 15 13 3 27 27 H 1.08993 * 110.96742 * 97.39055 * 15 13 3 28 28 H 1.09000 * 110.48632 * 266.12172 * 16 15 13 29 29 H 1.09002 * 110.49097 * 143.47693 * 16 15 13 30 30 H 0.97007 * 124.34227 * 179.60968 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5530 2.1475 -1.2397 6 1 0.8583 2.9701 -1.1554 7 6 1.9942 1.7424 -2.4815 8 7 2.9700 0.8660 -2.5789 9 14 1.2062 2.4382 -4.0256 10 1 1.3779 3.9130 -4.0475 11 1 1.8554 1.8459 -5.2227 12 1 -0.2416 2.1082 -4.0341 13 6 1.5145 2.1692 1.2397 14 1 0.4247 2.1837 1.2341 15 6 2.0680 3.6106 1.2914 16 6 2.2609 3.8198 2.8113 17 6 2.4280 2.4199 3.3603 18 8 2.8717 2.1522 4.4567 19 7 2.0076 1.5165 2.4582 20 1 -0.3633 0.5500 0.8680 21 1 -0.3634 0.4768 -0.9104 22 1 -0.3634 -1.0268 0.0422 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.2808 0.5812 -3.4525 26 1 3.0192 3.6823 0.7640 27 1 1.3459 4.3203 0.8880 28 1 1.3824 4.2973 3.2452 29 1 3.1539 4.4143 3.0042 30 1 2.0273 0.5564 2.5951 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354194.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:00 Heat of formation + Delta-G solvation = -76.502350 kcal Electronic energy + Delta-G solvation = -12951.194686 eV Core-core repulsion = 10744.694805 eV Total energy + Delta-G solvation = -2206.499881 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.22904 -38.23263 -35.75418 -33.41626 -32.05953 -29.72129 -26.99239 -25.24392 -22.78635 -21.54721 -20.66564 -18.27477 -18.04730 -17.01419 -16.47320 -15.71851 -15.06564 -14.79815 -14.62766 -14.21930 -14.00278 -13.47848 -13.27492 -12.75737 -12.72565 -12.41883 -12.36275 -11.83648 -11.78720 -11.48705 -11.08089 -10.82123 -10.72179 -10.36190 -9.80237 -8.05761 -6.11303 1.47959 1.50276 1.55296 1.66308 2.46205 2.65949 3.28042 3.61018 3.89625 4.13694 4.36756 4.59129 4.63672 4.73460 4.81551 4.91224 5.01975 5.19915 5.26068 5.40296 5.52719 5.61598 5.75324 5.89036 5.96569 6.07178 6.21545 6.40640 6.98833 7.35257 7.54831 9.03361 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047755 B = 0.010913 C = 0.009925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.188645 B = 2565.070486 C = 2820.376296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C 0.045 3.955 4 H -0.002 1.002 5 C -0.505 4.505 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.922 5.922 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.297 1.297 12 H -0.270 1.270 13 C 0.137 3.863 14 H 0.087 0.913 15 C -0.110 4.110 16 C -0.145 4.145 17 C 0.507 3.493 18 O -0.599 6.599 19 N -0.716 5.716 20 H 0.056 0.944 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.256 0.744 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 4.194 4.407 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.026 3.974 4 H 0.016 0.984 5 C -0.544 4.544 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.562 5.562 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.224 1.224 12 H -0.195 1.195 13 C 0.033 3.967 14 H 0.105 0.895 15 C -0.148 4.148 16 C -0.185 4.185 17 C 0.295 3.705 18 O -0.482 6.482 19 N -0.368 5.368 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.849 4.095 4.793 7.953 hybrid contribution 0.067 -0.597 -1.165 1.310 sum -4.782 3.498 3.629 6.948 Atomic orbital electron populations 1.21602 0.95670 0.99791 1.01439 1.21392 0.96148 0.98784 0.98490 1.18911 0.94610 0.92296 0.91624 0.98382 1.21217 1.26090 1.16377 0.90682 0.91387 1.25604 0.95001 0.95805 1.01774 1.70088 1.27382 1.34375 1.24382 0.85868 0.79015 0.78875 0.79459 1.19390 1.22388 1.19537 1.21976 0.98540 0.92848 0.83311 0.89546 1.22519 1.02760 0.95604 0.93943 1.22392 1.06105 0.93407 0.96606 1.21543 0.75177 0.90451 0.83322 1.90656 1.49296 1.85348 1.22910 1.46621 1.62856 1.09452 1.17917 0.92460 0.93554 0.93913 0.94345 0.95119 0.93460 0.91595 0.87764 0.85650 0.87448 0.75749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.34 71.98 0.67 -3.96 16 2 C -0.11 -4.64 5.40 30.59 0.17 -4.48 16 3 C 0.04 1.96 1.61 -11.54 -0.02 1.94 16 4 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 5 C -0.51 -23.95 6.73 25.60 0.17 -23.78 16 6 H 0.07 3.04 7.68 -2.91 -0.02 3.02 16 7 C 0.02 0.85 5.20 84.65 0.44 1.29 16 8 N -0.92 -51.07 12.15 21.45 0.26 -50.81 16 9 Si 0.94 40.54 29.55 68.60 2.03 42.57 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.14 4.72 2.58 45.45 0.12 4.84 16 14 H 0.09 2.80 6.44 -2.39 -0.02 2.78 16 15 C -0.11 -3.32 6.03 31.65 0.19 -3.13 16 16 C -0.15 -3.86 6.86 30.59 0.21 -3.65 16 17 C 0.51 17.64 8.43 87.90 0.74 18.39 16 18 O -0.60 -25.06 18.03 -3.02 -0.05 -25.12 16 19 N -0.72 -24.30 5.74 -439.44 -2.52 -26.83 16 20 H 0.06 1.82 6.31 -2.39 -0.02 1.81 16 21 H 0.05 1.82 7.32 -2.38 -0.02 1.81 16 22 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.04 1.90 6.88 -2.39 -0.02 1.88 16 24 H 0.03 1.17 6.87 -2.39 -0.02 1.16 16 25 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.07 2.26 7.91 -2.38 -0.02 2.24 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.40 13.41 7.64 -92.70 -0.71 12.70 16 Total: -1.00 -59.44 244.98 2.82 -56.62 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.42 Total: 16.11 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 2.69 Total: -12.54 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -2.26 Total: -77.64 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -59.44 2.82 -56.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354194.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.883 kcal (2) G-P(sol) polarization free energy of solvation -59.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds