Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.50697 * 109.47114 * 120.00121 * 2 1 3 5 5 H 1.08001 * 120.00342 * 120.00341 * 4 2 1 6 6 C 1.37878 * 119.99823 * 299.99729 * 4 2 1 7 7 N 1.31511 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46768 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46968 * 120.00265 * 8 6 4 11 11 H 1.48497 * 109.47260 * 240.00835 * 8 6 4 12 12 C 1.52999 * 109.47245 * 240.00222 * 2 1 3 13 13 H 1.09002 * 110.43437 * 299.29850 * 12 2 1 14 14 C 1.54626 * 110.48720 * 61.84261 * 12 2 1 15 15 C 1.54472 * 101.76836 * 94.01233 * 14 12 2 16 16 N 1.46763 * 105.47339 * 25.41472 * 15 14 12 17 17 C 1.46498 * 124.34874 * 162.96300 * 16 15 14 18 18 C 1.34418 * 111.30192 * 342.98587 * 16 15 14 19 19 O 1.21279 * 124.94017 * 180.41016 * 18 16 15 20 20 H 1.08997 * 109.46498 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47297 * 300.00118 * 1 2 3 22 22 H 1.09002 * 109.46814 * 60.00362 * 1 2 3 23 23 H 0.97002 * 120.00432 * 179.97438 * 7 6 4 24 24 H 1.09006 * 110.97062 * 212.13639 * 14 12 2 25 25 H 1.09004 * 110.96994 * 335.88870 * 14 12 2 26 26 H 1.09004 * 110.24555 * 144.41589 * 15 14 12 27 27 H 1.09002 * 110.24504 * 266.32326 * 15 14 12 28 28 H 1.09000 * 109.47535 * 89.99888 * 17 16 15 29 29 H 1.08998 * 109.47179 * 210.00017 * 17 16 15 30 30 H 1.08999 * 109.47350 * 329.99993 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2871 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5867 4.8160 12 6 2.0401 -0.7212 -1.2493 13 1 1.6957 -1.7553 -1.2589 14 6 1.5760 0.0158 -2.5269 15 6 2.7850 0.9320 -2.8188 16 7 3.9394 0.2640 -2.2064 17 6 5.3362 0.5705 -2.5243 18 6 3.5504 -0.6655 -1.3167 19 8 4.3010 -1.3585 -0.6631 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7082 1.1609 3.4844 24 1 1.4123 -0.6863 -3.3445 25 1 0.6786 0.6036 -2.3341 26 1 2.9328 1.0303 -3.8943 27 1 2.6323 1.9128 -2.3684 28 1 5.6970 1.3543 -1.8581 29 1 5.9435 -0.3251 -2.3938 30 1 5.4076 0.9106 -3.5574 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416825.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = -41.028657 kcal Electronic energy + Delta-G solvation = -13043.188965 eV Core-core repulsion = 10838.227339 eV Total energy + Delta-G solvation = -2204.961626 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80376 -35.74044 -34.59416 -32.07157 -29.59743 -26.75979 -25.69040 -25.02143 -21.90606 -19.55496 -18.67039 -16.51193 -15.89526 -15.41080 -14.84072 -14.35484 -13.47787 -13.09333 -12.84625 -12.48079 -12.17406 -12.09850 -11.87773 -11.44724 -10.97407 -10.68274 -10.62693 -10.45338 -10.20708 -9.97187 -9.33843 -8.98037 -8.48696 -8.25880 -8.16013 -5.90493 -3.93849 3.38173 3.45699 3.47993 3.55724 3.60130 4.55040 5.07059 5.08727 5.32013 5.41949 5.56590 5.69725 5.75920 5.87111 5.97961 6.18592 6.34311 6.55379 6.65064 6.90816 7.09026 7.12748 7.27723 7.70150 7.80549 7.95552 8.19873 8.50504 8.99765 9.14346 9.71222 11.16118 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040448 B = 0.012704 C = 0.010720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.088033 B = 2203.568780 C = 2611.344965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 H 0.027 0.973 4 C -0.506 4.506 5 H 0.067 0.933 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.890 3.110 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.109 4.109 13 H 0.090 0.910 14 C -0.137 4.137 15 C 0.110 3.890 16 N -0.638 5.638 17 C 0.101 3.899 18 C 0.533 3.467 19 O -0.526 6.526 20 H 0.027 0.973 21 H 0.085 0.915 22 H 0.012 0.988 23 H 0.257 0.743 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 1.449 -11.002 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.045 0.955 4 C -0.544 4.544 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.718 3.282 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.130 4.130 13 H 0.109 0.891 14 C -0.175 4.175 15 C -0.013 4.013 16 N -0.374 5.374 17 C -0.042 4.042 18 C 0.322 3.678 19 O -0.401 6.401 20 H 0.047 0.953 21 H 0.104 0.896 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.142 1.190 -10.527 10.808 hybrid contribution 0.376 -0.247 0.845 0.957 sum 2.518 0.944 -9.682 10.048 Atomic orbital electron populations 1.21853 0.97949 0.99273 1.00299 1.18525 0.92791 0.95202 0.89150 0.95519 1.21376 1.30174 1.12695 0.90147 0.91488 1.24924 0.95158 0.95041 0.98977 1.69892 1.37470 1.23293 1.23035 0.86549 0.78568 0.80015 0.83061 1.19565 1.21234 1.21189 1.22177 0.91418 1.02049 0.97393 0.89147 1.22785 0.97906 0.98900 0.97916 1.21955 0.85648 0.96598 0.97075 1.48213 1.05874 1.39725 1.43626 1.21382 0.81825 1.01266 0.99703 1.21041 0.91656 0.78038 0.77015 1.90622 1.60333 1.45104 1.44063 0.95349 0.89615 0.96942 0.93295 0.91339 0.88915 0.91620 0.91589 0.93256 0.91274 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.75 37.16 0.33 -2.84 16 2 C 0.06 1.55 1.89 -91.77 -0.17 1.38 16 3 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 4 C -0.51 -14.55 7.96 -34.44 -0.27 -14.83 16 5 H 0.07 2.03 6.79 -52.49 -0.36 1.67 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.90 -26.19 11.32 55.43 0.63 -25.56 16 8 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 9 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C -0.11 -2.28 2.45 -90.63 -0.22 -2.50 16 13 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 14 C -0.14 -2.14 6.53 -25.10 -0.16 -2.31 16 15 C 0.11 1.61 7.35 -3.13 -0.02 1.59 16 16 N -0.64 -11.35 3.33 -180.29 -0.60 -11.96 16 17 C 0.10 1.44 10.96 59.85 0.66 2.10 16 18 C 0.53 11.88 6.96 -10.86 -0.08 11.81 16 19 O -0.53 -13.76 16.47 5.56 0.09 -13.67 16 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 22 H 0.01 0.23 6.23 -51.93 -0.32 -0.09 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.09 1.40 5.96 -51.93 -0.31 1.09 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 246.57 15.07 3.72 3.72 Total: -1.00 -32.57 246.57 -5.47 -38.04 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -4.23 Total: -4.24 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.05 Total: -4.00 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.03 Total: -37.51 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.57 -5.47 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416825.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.989 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds