Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.50697 * 109.47114 * 120.00121 * 2 1 3 5 5 H 1.08001 * 120.00342 * 120.00341 * 4 2 1 6 6 C 1.37878 * 119.99823 * 299.99729 * 4 2 1 7 7 N 1.31511 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46768 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46968 * 120.00265 * 8 6 4 11 11 H 1.48497 * 109.47260 * 240.00835 * 8 6 4 12 12 C 1.52999 * 109.47245 * 240.00222 * 2 1 3 13 13 H 1.09002 * 110.43437 * 299.29850 * 12 2 1 14 14 C 1.54626 * 110.48720 * 61.84261 * 12 2 1 15 15 C 1.54472 * 101.76836 * 94.01233 * 14 12 2 16 16 N 1.46763 * 105.47339 * 25.41472 * 15 14 12 17 17 C 1.46498 * 124.34874 * 162.96300 * 16 15 14 18 18 C 1.34418 * 111.30192 * 342.98587 * 16 15 14 19 19 O 1.21279 * 124.94017 * 180.41016 * 18 16 15 20 20 H 1.08997 * 109.46498 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47297 * 300.00118 * 1 2 3 22 22 H 1.09002 * 109.46814 * 60.00362 * 1 2 3 23 23 H 0.97002 * 120.00432 * 179.97438 * 7 6 4 24 24 H 1.09006 * 110.97062 * 212.13639 * 14 12 2 25 25 H 1.09004 * 110.96994 * 335.88870 * 14 12 2 26 26 H 1.09004 * 110.24555 * 144.41589 * 15 14 12 27 27 H 1.09002 * 110.24504 * 266.32326 * 15 14 12 28 28 H 1.09000 * 109.47535 * 89.99888 * 17 16 15 29 29 H 1.08998 * 109.47179 * 210.00017 * 17 16 15 30 30 H 1.08999 * 109.47350 * 329.99993 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2871 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5867 4.8160 12 6 2.0401 -0.7212 -1.2493 13 1 1.6957 -1.7553 -1.2589 14 6 1.5760 0.0158 -2.5269 15 6 2.7850 0.9320 -2.8188 16 7 3.9394 0.2640 -2.2064 17 6 5.3362 0.5705 -2.5243 18 6 3.5504 -0.6655 -1.3167 19 8 4.3010 -1.3585 -0.6631 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7082 1.1609 3.4844 24 1 1.4123 -0.6863 -3.3445 25 1 0.6786 0.6036 -2.3341 26 1 2.9328 1.0303 -3.8943 27 1 2.6323 1.9128 -2.3684 28 1 5.6970 1.3543 -1.8581 29 1 5.9435 -0.3251 -2.3938 30 1 5.4076 0.9106 -3.5574 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416825.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = -63.130340 kcal Electronic energy + Delta-G solvation = -13044.147366 eV Core-core repulsion = 10838.227339 eV Total energy + Delta-G solvation = -2205.920027 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35597 -37.45101 -36.39156 -33.92698 -31.26734 -28.27085 -27.17694 -26.97581 -23.52460 -21.22812 -20.25830 -18.49526 -17.45656 -17.12107 -16.42634 -16.24411 -15.06206 -14.66699 -14.51376 -14.16162 -13.79391 -13.53643 -13.14319 -13.10724 -12.91396 -12.64630 -12.29581 -12.26173 -12.00517 -11.85668 -11.17015 -10.93792 -10.45793 -10.30541 -9.56476 -8.10463 -6.19822 1.33333 1.35674 1.49565 1.78194 2.27423 2.42745 3.17345 3.68070 3.78673 4.15662 4.35401 4.47479 4.54108 4.70762 4.77494 4.82795 4.85279 5.04906 5.11641 5.17609 5.32303 5.43255 5.65065 5.79176 5.91545 6.11562 6.27066 6.41784 6.89951 7.38293 7.47646 8.94029 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040448 B = 0.012704 C = 0.010720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.088033 B = 2203.568780 C = 2611.344965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.064 3.936 3 H 0.000 1.000 4 C -0.525 4.525 5 H 0.041 0.959 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.941 3.059 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.271 1.271 12 C -0.114 4.114 13 H 0.081 0.919 14 C -0.124 4.124 15 C 0.106 3.894 16 N -0.632 5.632 17 C 0.094 3.906 18 C 0.516 3.484 19 O -0.583 6.583 20 H 0.027 0.973 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.260 0.740 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 2.225 -12.920 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.045 3.955 3 H 0.018 0.982 4 C -0.564 4.564 5 H 0.059 0.941 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.768 3.232 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.135 4.135 13 H 0.099 0.901 14 C -0.162 4.162 15 C -0.016 4.016 16 N -0.367 5.367 17 C -0.048 4.048 18 C 0.306 3.694 19 O -0.463 6.463 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.133 0.867 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.735 2.009 -12.484 12.763 hybrid contribution 0.531 -0.451 1.401 1.565 sum 2.266 1.558 -11.083 11.419 Atomic orbital electron populations 1.21676 0.96536 0.99342 1.00755 1.18396 0.93848 0.93528 0.89729 0.98153 1.21612 1.30048 1.12340 0.92367 0.94076 1.25557 0.95525 0.95843 1.01328 1.69979 1.37884 1.23897 1.23658 0.85763 0.78379 0.78720 0.80377 1.20692 1.20674 1.19613 1.22059 0.91138 1.01855 0.98473 0.90115 1.22798 0.98563 0.99109 0.95686 1.22269 0.83774 0.95800 0.99748 1.48379 1.08187 1.38119 1.41994 1.21640 0.79786 1.00805 1.02533 1.21377 0.92078 0.78638 0.77355 1.90574 1.61560 1.47617 1.46508 0.95359 0.92667 0.92917 0.93050 0.88110 0.87991 0.86653 0.91462 0.93334 0.92487 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.75 71.98 0.63 -5.10 16 2 C 0.06 3.21 1.89 -11.54 -0.02 3.18 16 3 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 4 C -0.53 -31.09 7.96 25.60 0.20 -30.89 16 5 H 0.04 2.60 6.79 -2.91 -0.02 2.58 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.91 -53.89 11.32 21.45 0.24 -53.65 16 8 Si 0.94 47.33 29.54 68.60 2.03 49.35 16 9 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 12 C -0.11 -4.70 2.45 -10.80 -0.03 -4.73 16 13 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 14 C -0.12 -3.43 6.53 31.65 0.21 -3.22 16 15 C 0.11 2.66 7.35 86.83 0.64 3.29 16 16 N -0.63 -21.24 3.33 -842.92 -2.81 -24.05 16 17 C 0.09 2.47 10.96 127.77 1.40 3.87 16 18 C 0.52 23.07 6.96 87.90 0.61 23.68 16 19 O -0.58 -31.61 16.47 -3.03 -0.05 -31.66 16 20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 22 H 0.05 1.94 6.23 -2.39 -0.01 1.92 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 25 H 0.10 2.65 5.96 -2.39 -0.01 2.63 16 26 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.40 246.57 4.61 -68.78 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.11 Total: -0.24 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.09 Total: -8.55 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -2.57 Total: -77.70 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.66 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -73.40 4.61 -68.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416825.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.654 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds