Wall clock time and date at job start Mon Mar 30 2020 02:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46848 * 2 1 4 4 C 1.50698 * 109.47231 * 239.99927 * 2 1 3 5 5 H 1.08001 * 119.99675 * 268.81606 * 4 2 1 6 6 C 1.37870 * 119.99767 * 89.09175 * 4 2 1 7 7 N 1.31517 * 119.99852 * 186.26288 * 6 4 2 8 8 Si 1.86793 * 120.00596 * 6.26544 * 6 4 2 9 9 H 1.48507 * 109.47051 * 84.92055 * 8 6 4 10 10 H 1.48501 * 109.47648 * 204.92308 * 8 6 4 11 11 H 1.48502 * 109.46971 * 324.92919 * 8 6 4 12 12 C 1.53008 * 109.47287 * 119.99438 * 2 1 3 13 13 H 1.09002 * 110.42790 * 60.69970 * 12 2 1 14 14 C 1.54625 * 110.48517 * 298.16567 * 12 2 1 15 15 C 1.54486 * 101.76136 * 216.52143 * 14 12 2 16 16 N 1.46769 * 105.47340 * 25.41494 * 15 14 12 17 17 C 1.46491 * 124.34918 * 162.97921 * 16 15 14 18 18 C 1.34653 * 111.33503 * 342.87130 * 16 15 14 19 19 O 1.21281 * 125.07306 * 180.51796 * 18 16 15 20 20 H 1.09001 * 109.46603 * 305.83571 * 1 2 3 21 21 H 1.08989 * 109.46799 * 65.84040 * 1 2 3 22 22 H 1.08997 * 109.46835 * 185.83866 * 1 2 3 23 23 H 0.96995 * 120.00257 * 179.97438 * 7 6 4 24 24 H 1.08997 * 110.97421 * 334.63546 * 14 12 2 25 25 H 1.08996 * 110.97203 * 98.36702 * 14 12 2 26 26 H 1.09001 * 110.24468 * 144.41633 * 15 14 12 27 27 H 1.09002 * 110.24725 * 266.41658 * 15 14 12 28 28 H 1.09002 * 109.47151 * 89.99700 * 17 16 15 29 29 H 1.08993 * 109.47189 * 210.00066 * 17 16 15 30 30 H 1.09005 * 109.47541 * 330.00618 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2306 -1.7716 -1.1981 6 6 2.2443 -0.0046 -2.3956 7 7 2.5636 -0.6413 -3.5013 8 14 2.0781 1.8559 -2.4042 9 1 3.3577 2.4692 -1.9658 10 1 1.7528 2.3177 -3.7776 11 1 0.9920 2.2601 -1.4757 12 6 2.0401 -0.7212 1.2494 13 1 1.6957 -1.7553 1.2590 14 6 1.5759 0.0158 2.5270 15 6 2.7983 -0.1619 3.4547 16 7 3.9468 -0.3423 2.5589 17 6 5.3455 -0.1925 2.9678 18 6 3.5505 -0.6655 1.3133 19 8 4.2937 -0.8793 0.3790 20 1 -0.3632 0.6017 0.8332 21 1 -0.3632 0.4206 -0.9376 22 1 -0.3633 -1.0223 0.1045 23 1 2.7124 -0.1448 -4.3211 24 1 1.3907 1.0705 2.3235 25 1 0.6912 -0.4587 2.9514 26 1 2.9365 0.7266 4.0709 27 1 2.6692 -1.0422 4.0844 28 1 5.7274 -1.1526 3.3149 29 1 5.9377 0.1486 2.1187 30 1 5.4122 0.5380 3.7742 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:46 Heat of formation + Delta-G solvation = -36.726178 kcal Electronic energy + Delta-G solvation = -13074.044133 eV Core-core repulsion = 10869.269077 eV Total energy + Delta-G solvation = -2204.775057 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.78744 -35.63772 -34.77907 -31.98288 -30.25561 -26.79015 -25.83772 -25.02462 -21.69883 -19.75595 -18.49838 -16.88929 -15.95849 -15.78625 -14.82010 -14.20076 -13.31547 -13.23282 -12.89415 -12.45378 -12.37764 -12.20873 -12.00274 -11.69537 -11.39895 -10.93513 -10.75650 -10.50491 -10.45396 -9.67543 -9.35348 -9.03555 -8.63855 -8.31081 -8.19893 -5.87286 -3.81142 3.39611 3.45064 3.46298 3.47334 3.55217 4.58144 4.97074 4.99667 5.18763 5.44451 5.50945 5.59509 5.67949 5.76479 5.94589 5.99575 6.21489 6.33243 6.39093 6.54764 6.82088 6.83520 7.03198 7.22233 7.46790 7.70261 7.90591 8.69096 9.05961 9.19783 9.76172 11.27631 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039235 B = 0.013726 C = 0.012122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.475721 B = 2039.407757 C = 2309.333051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 H 0.028 0.972 4 C -0.487 4.487 5 H 0.073 0.927 6 C 0.073 3.927 7 N -0.903 5.903 8 Si 0.869 3.131 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.266 1.266 12 C -0.103 4.103 13 H 0.097 0.903 14 C -0.134 4.134 15 C 0.109 3.891 16 N -0.646 5.646 17 C 0.101 3.899 18 C 0.518 3.482 19 O -0.487 6.487 20 H 0.023 0.977 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.260 0.740 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 2.904 14.961 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 H 0.046 0.954 4 C -0.525 4.525 5 H 0.091 0.909 6 C -0.128 4.128 7 N -0.542 5.542 8 Si 0.697 3.303 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.190 1.190 12 C -0.124 4.124 13 H 0.115 0.885 14 C -0.172 4.172 15 C -0.015 4.015 16 N -0.385 5.385 17 C -0.041 4.041 18 C 0.305 3.695 19 O -0.358 6.358 20 H 0.042 0.958 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.516 2.810 14.240 14.524 hybrid contribution 0.080 1.048 0.025 1.052 sum -0.436 3.858 14.266 14.785 Atomic orbital electron populations 1.22023 0.98368 0.99809 0.99150 1.19042 0.92419 0.95467 0.92452 0.95404 1.20793 1.42311 0.96801 0.92553 0.90852 1.24919 0.94833 0.97450 0.95555 1.69898 1.48979 1.35394 0.99946 0.87013 0.78773 0.87649 0.76890 1.20566 1.21742 1.19033 1.22007 0.92243 1.01778 0.96397 0.88484 1.22743 0.96742 1.01967 0.95702 1.21946 0.86154 1.00567 0.92801 1.48420 1.05791 1.72751 1.11543 1.21370 0.81844 1.00431 1.00496 1.21099 0.91664 0.75581 0.81117 1.90762 1.60079 1.46709 1.38226 0.95815 0.93410 0.93634 0.93032 0.90444 0.89948 0.91523 0.92076 0.93505 0.91104 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.67 37.16 0.32 -2.47 16 2 C 0.03 0.60 1.33 -91.77 -0.12 0.48 16 3 H 0.03 0.69 5.60 -51.93 -0.29 0.40 16 4 C -0.49 -14.21 7.20 -34.44 -0.25 -14.46 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.90 -29.21 13.96 55.43 0.77 -28.44 16 8 Si 0.87 22.74 26.49 -169.99 -4.50 18.23 16 9 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.27 -6.45 6.59 56.52 0.37 -6.08 16 12 C -0.10 -2.04 2.49 -90.63 -0.23 -2.27 16 13 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 14 C -0.13 -1.92 5.74 -25.10 -0.14 -2.06 16 15 C 0.11 1.39 7.35 -3.12 -0.02 1.37 16 16 N -0.65 -10.88 3.34 -180.22 -0.60 -11.48 16 17 C 0.10 1.39 10.96 59.84 0.66 2.05 16 18 C 0.52 11.35 7.43 -10.76 -0.08 11.27 16 19 O -0.49 -13.22 16.03 5.56 0.09 -13.13 16 20 H 0.02 0.40 7.48 -51.93 -0.39 0.01 16 21 H 0.05 1.04 7.51 -51.94 -0.39 0.65 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 24 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 246.99 15.07 3.72 3.72 Total: -1.00 -35.00 246.99 -4.92 -39.92 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -4.43 Total: -4.86 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.17 Total: -39.92 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.50 Total: 18.23 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -35.00 -4.92 -39.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.195 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds