Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46832 * 2 1 4 4 C 1.50700 * 109.47115 * 119.99816 * 2 1 3 5 5 H 1.07998 * 119.99739 * 114.37556 * 4 2 1 6 6 C 1.37876 * 119.99740 * 294.37732 * 4 2 1 7 7 N 1.31519 * 119.99758 * 156.62085 * 6 4 2 8 8 Si 1.86794 * 120.00248 * 336.61419 * 6 4 2 9 9 H 1.48501 * 109.47373 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47266 * 300.00505 * 8 6 4 11 11 H 1.48506 * 109.47213 * 60.00468 * 8 6 4 12 12 C 1.52996 * 109.47203 * 240.00118 * 2 1 3 13 13 H 1.08998 * 110.43303 * 298.91071 * 12 2 1 14 14 C 1.54622 * 110.48619 * 176.22852 * 12 2 1 15 15 C 1.54480 * 101.76493 * 266.11667 * 14 12 2 16 16 N 1.46761 * 105.47340 * 334.58180 * 15 14 12 17 17 C 1.46500 * 124.35055 * 197.03414 * 16 15 14 18 18 C 1.34422 * 111.30013 * 17.01806 * 16 15 14 19 19 O 1.21280 * 124.93963 * 179.62401 * 18 16 15 20 20 H 1.09002 * 109.47128 * 52.68822 * 1 2 3 21 21 H 1.09001 * 109.47164 * 172.68099 * 1 2 3 22 22 H 1.08994 * 109.47265 * 292.68071 * 1 2 3 23 23 H 0.96991 * 119.99916 * 354.93000 * 7 6 4 24 24 H 1.09003 * 110.97336 * 24.23772 * 14 12 2 25 25 H 1.09008 * 110.97101 * 148.00110 * 14 12 2 26 26 H 1.09003 * 110.24877 * 215.58398 * 15 14 12 27 27 H 1.08997 * 110.31782 * 93.62323 * 15 14 12 28 28 H 1.09002 * 109.46787 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.47349 * 300.00071 * 17 16 15 30 30 H 1.08997 * 109.46941 * 60.00484 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5763 -1.6384 1.1340 6 6 1.7975 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4722 1.6544 2.6657 9 1 1.2520 1.9747 4.0989 10 1 2.6416 2.4189 2.1621 11 1 0.2650 2.0248 1.8841 12 6 2.0400 -0.7212 -1.2492 13 1 1.7013 -1.7572 -1.2554 14 6 3.5830 -0.6529 -1.3215 15 6 3.8021 0.5952 -2.2051 16 7 2.5853 0.7189 -3.0164 17 6 2.4820 1.5279 -4.2334 18 6 1.5780 -0.0057 -2.4995 19 8 0.4615 -0.0760 -2.9677 20 1 -0.3633 0.6229 -0.8174 21 1 -0.3633 -1.0193 -0.1309 22 1 -0.3633 0.3962 0.9481 23 1 1.8981 -1.9134 3.4362 24 1 4.0141 -0.5098 -0.3305 25 1 3.9912 -1.5445 -1.7977 26 1 4.6712 0.4546 -2.8478 27 1 3.9327 1.4809 -1.5834 28 1 1.4738 1.4460 -4.6395 29 1 2.6940 2.5704 -3.9958 30 1 3.2010 1.1696 -4.9700 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416834.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -45.191791 kcal Electronic energy + Delta-G solvation = -13056.557274 eV Core-core repulsion = 10851.415121 eV Total energy + Delta-G solvation = -2205.142153 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.04896 -35.96668 -34.76968 -32.15720 -30.30493 -26.71570 -26.15297 -24.53272 -21.63338 -19.93965 -18.72243 -17.43535 -16.21787 -15.64384 -15.03898 -13.90485 -13.53451 -13.47306 -13.17998 -12.60272 -12.21723 -12.19731 -11.96962 -11.79087 -11.31278 -11.06326 -10.62409 -10.40589 -10.10901 -9.70473 -9.61889 -9.16630 -8.80613 -8.38380 -8.16588 -6.45552 -4.04929 3.13775 3.40100 3.42369 3.45611 3.63043 4.52138 4.94718 5.03655 5.21977 5.29773 5.47942 5.51932 5.64697 5.79536 5.82027 6.06189 6.35256 6.44266 6.66939 6.72535 6.80447 6.95771 7.00713 7.26123 7.44391 7.56958 8.13249 8.38046 8.68223 8.90201 9.59532 10.91283 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044797 B = 0.011968 C = 0.011742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.890998 B = 2338.987897 C = 2384.059325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 H 0.020 0.980 4 C -0.602 4.602 5 H 0.060 0.940 6 C 0.039 3.961 7 N -0.899 5.899 8 Si 1.034 2.966 9 H -0.286 1.286 10 H -0.284 1.284 11 H -0.277 1.277 12 C -0.099 4.099 13 H 0.093 0.907 14 C -0.125 4.125 15 C 0.106 3.894 16 N -0.632 5.632 17 C 0.095 3.905 18 C 0.520 3.480 19 O -0.541 6.541 20 H 0.027 0.973 21 H 0.043 0.957 22 H 0.048 0.952 23 H 0.269 0.731 24 H 0.107 0.893 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 4.273 -10.902 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.038 0.962 4 C -0.639 4.639 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.532 5.532 8 Si 0.862 3.138 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.204 1.204 12 C -0.121 4.121 13 H 0.112 0.888 14 C -0.163 4.163 15 C -0.017 4.017 16 N -0.368 5.368 17 C -0.047 4.047 18 C 0.310 3.690 19 O -0.418 6.418 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.125 0.875 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.829 5.464 -10.088 12.095 hybrid contribution 0.353 -1.149 -1.221 1.714 sum 4.182 4.315 -11.310 12.807 Atomic orbital electron populations 1.22140 0.98460 1.00214 0.99339 1.18843 0.92499 0.95221 0.91506 0.96240 1.21835 1.40749 1.10592 0.90725 0.92186 1.25645 0.93264 1.05586 0.92196 1.70849 1.43960 1.06319 1.32051 0.84169 0.77292 0.76334 0.75981 1.21203 1.21035 1.20354 1.21993 0.95391 1.01063 0.93624 0.88848 1.22655 0.96289 0.95902 1.01421 1.22086 0.86489 0.99788 0.93352 1.48253 1.13631 1.48492 1.26416 1.21452 1.02894 0.94408 0.85981 1.21488 0.83803 0.78559 0.85199 1.90620 1.20637 1.64789 1.65787 0.95383 0.93817 0.93351 0.92084 0.87455 0.91537 0.91331 0.91268 0.90354 0.92612 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.40 37.16 0.31 -3.14 16 2 C 0.04 0.92 1.47 -91.77 -0.14 0.78 16 3 H 0.02 0.47 6.71 -51.93 -0.35 0.12 16 4 C -0.60 -16.09 7.65 -34.44 -0.26 -16.35 16 5 H 0.06 1.69 7.93 -52.49 -0.42 1.27 16 6 C 0.04 1.10 5.18 -17.82 -0.09 1.01 16 7 N -0.90 -26.92 13.70 55.43 0.76 -26.16 16 8 Si 1.03 24.95 26.45 -169.99 -4.50 20.45 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.44 6.18 56.52 0.35 -6.09 16 12 C -0.10 -2.03 2.45 -90.64 -0.22 -2.26 16 13 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16 14 C -0.13 -2.09 6.51 -25.10 -0.16 -2.26 16 15 C 0.11 1.53 7.35 -3.12 -0.02 1.51 16 16 N -0.63 -10.41 3.33 -180.29 -0.60 -11.01 16 17 C 0.09 1.22 11.14 59.85 0.67 1.88 16 18 C 0.52 10.52 6.80 -10.86 -0.07 10.45 16 19 O -0.54 -12.45 16.16 5.56 0.09 -12.36 16 20 H 0.03 0.64 6.89 -51.93 -0.36 0.29 16 21 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.05 1.18 5.51 -51.93 -0.29 0.90 16 23 H 0.27 8.01 8.73 -40.82 -0.36 7.66 16 24 H 0.11 1.95 7.04 -51.93 -0.37 1.58 16 25 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.08 7.53 -51.93 -0.39 0.69 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 244.31 15.07 3.68 3.68 Total: -1.00 -31.11 244.31 -4.89 -36.00 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.33 Total: -2.21 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 0.01 Total: -8.38 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.16 Total: -37.17 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.50 Total: 20.45 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.11 -4.89 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416834.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.193 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds